YRC Public Data Repository - Protein Structure Prediction

Protein:	YPR197C
Organism:	Saccharomyces cerevisiae
Length:	187 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPR197C.

Description	E-value	Query Range	Subject Range
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-85	[1..187]	[1..187]
gi\|886917 - gi\|886917\|emb\|CAA61173.1\| ORF 143 [Saccharomyces cerevisiae]	8.0E-30	[46..124]	[3..81]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYDIASAVI IIPLWFSRTM DVPTTKASDS IPLPPNPATT LPLIRVAIEF ERAEIKDPIS  60
   61 NTITEIIKHS FVPSISAKRP HNNMKTALER AYPVTNQPIL PKSWNLMPIV SYKVTTITIS 120
  121 KAARKRVNRS DITHKVKLKV LFIAYMSDGE AYVLYKQMSM IMRFKLLFKV VPRCHFFLRS 180
  181 AAVYQPF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits