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Protein: SMX3
Organism: Saccharomyces cerevisiae
Length: 86 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SMX3.

Description E-value Query
gi|190408104 - gi|190408104|gb|EDV11369.1| small nuclear ribonucleoprotein F [Saccharomyces cerevisiae RM11-1a]
gi|151942952 - gi|151942952|gb|EDN61298.1| Sm F [Saccharomyces cerevisiae YJM789]
RUXF_YEAST - Small nuclear ribonucleoprotein F OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMX3 P...
SMX3 - Core Sm protein Sm F; part of heteroheptameric complex (with Smb1p, Smd1p, Smd2p, Smd3p, Sme1p, and ...
2.0E-21 [1..86] [1..86]
DebB-PA - The gene Developmental embryonic B is referred to in FlyBase by the symbol Dmel\DebB (CG16792, FBgn0...
gi|194177214, gi... - gi|195485487|ref|XP_002091113.1| GE13467 [Drosophila yakuba], gi|194177214|gb|EDW90825.1| GE13467 [D...
gi|194201964, gi... - gi|195551862|ref|XP_002076315.1| DebB [Drosophila simulans], gi|195551853|ref|XP_002076311.1| GD1524...
gi|220956990 - gi|220956990|gb|ACL91038.1| DebB-PA [synthetic construct]
gi|54635536, gi|... - gi|54635536|gb|EAL24939.1| GA14154 [Drosophila pseudoobscura pseudoobscura], gi|125807333|ref|XP_001...
gi|125807333|ref... - GA14154-PA [Drosophila pseudoobscura], GA14154 [Drosophila pseudoobscura pseudoobscura]
gi|190620658, gi... - gi|194754150|ref|XP_001959360.1| GF12081 [Drosophila ananassae], gi|190620658|gb|EDV36182.1| GF12081...
gi|194883764, gi... - gi|194883764|ref|XP_001975970.1| GG22599 [Drosophila erecta], gi|190659157|gb|EDV56370.1| GG22599 [D...
gi|195056665, gi... - gi|195056665|ref|XP_001995140.1| GH22983 [Drosophila grimshawi], gi|193899346|gb|EDV98212.1| GH22983...
gi|195122320, gi... - gi|195122320|ref|XP_002005660.1| GI18952 [Drosophila mojavensis], gi|193910728|gb|EDW09595.1| GI1895...
gi|195149774, gi... - gi|195149774|ref|XP_002015830.1| GL11267 [Drosophila persimilis], gi|194109677|gb|EDW31720.1| GL1126...
gi|194125468, gi... - gi|195333646|ref|XP_002033498.1| GM20378 [Drosophila sechellia], gi|194125468|gb|EDW47511.1| GM20378...
gi|195381309, gi... - gi|195381309|ref|XP_002049395.1| GJ21558 [Drosophila virilis], gi|194144192|gb|EDW60588.1| GJ21558 [...
gi|194162173, gi... - gi|195436262|ref|XP_002066088.1| GK22120 [Drosophila willistoni], gi|194162173|gb|EDW77074.1| GK2212...
3.0E-19 [7..86] [1..79]
snr-5 - small nuclear ribonucleoprotein Sm F (snRNP core protein F) status:Confirmed UniProt:P34659 protein_...
3.0E-19 [7..85] [1..78]
LSM6A_ARATH - Sm-like protein LSM6A OS=Arabidopsis thaliana GN=LSM6A PE=1 SV=1
5.0E-19 [1..84] [1..83]
gi|34902916, gi|... - gi|6016876|dbj|BAA85219.1| unnamed protein product [Oryza sativa (japonica cultivar-group)], gi|3490...
5.0E-17 [13..86] [1..74]
gi|27573934, gi|... - gi|27573935|pdb|1MGQ|G Chain G, Crystal Structure Of A Heptameric Sm-Like Protein From Methanobacter...
7.0E-17 [3..83] [1..83]
gi|49900002, gi|... - gi|89273434|emb|CAJ82339.1| small nuclear ribonucleoprotein polypeptide F [Xenopus tropicalis], gi|5...
RUXF_BOVIN - Small nuclear ribonucleoprotein F OS=Bos taurus GN=SNRPF PE=3 SV=2
RUXF_MOUSE - Small nuclear ribonucleoprotein F OS=Mus musculus GN=Snrpf PE=1 SV=1
gi|109481861, gi... - gi|186910249|ref|NP_001119563.1| small nuclear ribonucleoprotein polypeptide F [Rattus norvegicus], ...
gi|542143322|ref... - PREDICTED: small nuclear ribonucleoprotein F [Zonotrichia albicollis]
ENSCJAT00000005183 - null
ENSMMUT000000130... - null, null
ENSPTRT00000009771 - null
RUXF_XENLA - Small nuclear ribonucleoprotein F OS=Xenopus laevis GN=snrpf PE=3 SV=1
CCDS9055.1_1 - null
tr|F7CC29|F7CC29... - Small nuclear ribonucleoprotein polypeptide F OS=Equus caballus OX=9796 GN=SNRPF PE=3 SV=1
SNRPF - small nuclear ribonucleoprotein polypeptide F
gi|118082523 - gi|118082523|ref|XP_416157.2| PREDICTED: similar to SNRPF protein [Gallus gallus]
8.0E-17 [9..84] [1..75]


Predicted Domain #1
Region A:
Residues: [1-86]
      1          11         21         31         41         51         
      |          |          |          |          |          |          

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Detection Method: PSI-BLAST
Confidence: 67.69897
Match: 1i81A_
Description: Archaeal homoheptameric Sm protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
9.36615441177233 bayes_pls_golite062009
RNA binding 5.81718051012035 bayes_pls_golite062009
nucleic acid binding 2.69031444148163 bayes_pls_golite062009
mRNA binding 2.57166143288861 bayes_pls_golite062009
binding 2.44117021254507 bayes_pls_golite062009
protein binding 0.318488892917007 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle