YRC Public Data Repository - Protein Structure Prediction

Protein:	SEC23
Organism:	Saccharomyces cerevisiae
Length:	768 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SEC23.

Description	E-value	Query Range	Subject Range
SEC23B - Sec23 homolog B (S. cerevisiae)	0.0	[3..767]	[8..766]
gi\|13365827 - gi\|13365827\|dbj\|BAB39299.1\| hypothetical protein [Macaca fascicularis]	0.0	[3..767]	[8..766]
SC23B_MOUSE - Protein transport protein Sec23B OS=Mus musculus GN=Sec23b PE=1 SV=1 gi\|126035610 - gi\|126035610\|gb\|ABN72531.1\| SEC23B [Mus spretus]	0.0	[3..768]	[8..767]
gi\|7271162 - gi\|7271162\|emb\|CAB81549.1\| putative Sec23 protein [Drosophila melanogaster]	0.0	[3..766]	[8..767]
SC23A_DANRE - Protein transport protein Sec23A OS=Danio rerio GN=sec23a PE=2 SV=1	0.0	[3..768]	[8..765]

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Predicted Domain #1

Region A:
Residues: [1-626]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFETNEDIN GVRFTWNVFP STRSDANSNV VPVGCLYTPL KEYDELNVAP YNPVVCSGPH  60
   61 CKSILNPYCV IDPRNSSWSC PICNSRNHLP PQYTNLSQEN MPLELQSTTI EYITNKPVTV 120
  121 PPIFFFVVDL TSETENLDSL KESIITSLSL LPPNALIGLI TYGNVVQLHD LSSETIDRCN 180
  181 VFRGDREYQL EALTEMLTGQ KPTGPGGAAS HLPNAMNKVT PFSLNRFFLP LEQVEFKLNQ 240
  241 LLENLSPDQW SVPAGHRPLR ATGSALNIAS LLLQGCYKNI PARIILFASG PGTVAPGLIV 300
  301 NSELKDPLRS HHDIDSDHAQ HYKKACKFYN QIAQRVAANG HTVDIFAGCY DQIGMSEMKQ 360
  361 LTDSTGGVLL LTDAFSTAIF KQSYLRLFAK DEEGYLKMAF NGNMAVKTSK DLKVQGLIGH 420
  421 ASAVKKTDAN NISESEIGIG ATSTWKMASL SPYHSYAIFF EIANTAANSN PMMSAPGSAD 480
  481 RPHLAYTQFI TTYQHSSGTN RIRVTTVANQ LLPFGTPAIA ASFDQEAAAV LMARIAVHKA 540
  541 ETDDGADVIR WLDRTLIKLC QKYADYNKDD PQSFRLAPNF SLYPQFTYYL RRSQFLSVFN 600
  601 NSPDETAFYR HIFTREDTTN SLIMIQ

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [749-768]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVSLQNFMTH LQQVAVSGQA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11000.0
Match:	1m2oA_
Description:	Sec23
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [627-748]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTLTSFSMED DPQPVLLDSI SVKPNTILLL DTFFFILIYH GEQIAQWRKA GYQDDPQYAD  60
   61 FKALLEEPKL EAAELLVDRF PLPRFIDTEA GGSQARFLLS KLNPSDNYQD MARGGSTIVL 120
  121 TD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11000.0
Match:	1m2oA_
Description:	Sec23
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits