YRC Public Data Repository - Protein Structure Prediction

Protein:	TDA6
Organism:	Saccharomyces cerevisiae
Length:	467 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TDA6.

Description	E-value	Query Range	Subject Range
VPS62_YEAST - Vacuolar protein sorting-associated protein 62 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S28... gi\|151943419 - gi\|151943419\|gb\|EDN61730.1\| vacuolar sorting protein [Saccharomyces cerevisiae YJM789] gi\|190406843 - gi\|190406843\|gb\|EDV10110.1\| vacuolar protein sorting protein 62 [Saccharomyces cerevisiae RM11-1a] VPS62 - Vacuolar protein sorting (VPS) protein required for cytoplasm to vacuole targeting of proteins	675.0	[0..9]	[466..18]
gi\|49526997, gi\|... - gi\|50290511\|ref\|XP_447687.1\| hypothetical protein CAGL0I10296g [Candida glabrata CBS138], gi\|4952699... gi\|49526997 - gi\|49526997\|emb\|CAG60632.1\| unnamed protein product [Candida glabrata]	453.0	[0..60]	[466..44]
gi\|45198842, gi\|... - gi\|45198842\|ref\|NP_985871.1\| AFR324Wp [Ashbya gossypii ATCC 10895], gi\|44984871\|gb\|AAS53695.1\| AFR32... gi\|44984871 - gi\|44984871\|gb\|AAS53695.1\| AFR324Wp [Ashbya gossypii ATCC 10895]	446.0	[0..76]	[466..71]
gi\|31711974, gi\|... - gi\|31711974\|gb\|AAP68343.1\| At5g18490 [Arabidopsis thaliana], gi\|15450864\|gb\|AAK96703.1\| Unknown prot...	443.0	[0..40]	[396..207]
gi\|49643249 - gi\|49643249\|emb\|CAG99201.1\| KLLA0E03785p [Kluyveromyces lactis] gi\|49643249, gi\|... - gi\|50308227\|ref\|XP_454114.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643249\|emb\|CAG9920...	428.0	[0..56]	[466..30]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHCVLARILL WFLIVDLSVI RALVLPPLKD YDPLEPLMKR DMAMGQRNRF KVDGQLPPIL  60
   61 NSTDVTDDQR SLHTPGEIPS YVINHCPLVH LYSEEKYWPS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.250	a.61.1	Retroviral matrix proteins
View	Download	0.204	a.7.12	Description not found.
View	Download	0.201	d.24.1	Pili subunits

Predicted Domain #2

Region A:
Residues: [101-467]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DIAEYVQNFQ IKDKNGNSIS THENLTLHDL KAEYHVDLFG NKTETHIPSS EVFLTSLDDF  60
   61 DKDPKWLLGH LPEYGTGYNS KAPAILIVVD KGNGWVDAFW FFFYPFNHGP FIMGHGPWGN 120
  121 HVGDWEHSLV RFYKGIPKYL WMSAHSSGTG YRYEAVEKFK KLRKRKQQDS DDGGDTILER 180
  181 PLIFSARGTH ANYASAGQHA HDIPFFFMPL SDFTDRGPLW DPSLNFYSYT FDGKTVTPSS 240
  241 EREESLGLDW LHFQGGWGDQ QLPARDPRQK WCVAQWKYIG GPRGPLFKKL DRLNLCGGVK 300
  301 KWNFWNGGCP ARRLIKKAEG LDSESTDLMG DNCGVLLYRI RPKWLRGILR FLMWRGILCS 360
  361 LMEFFTN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits