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View Structure Prediction Details

Protein: NCA2
Organism: Saccharomyces cerevisiae
Length: 616 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NCA2.

Description E-value Query
Range
Subject
Range
NCA2 - Protein involved in regulation of mitochondrial expression of subunits 6 (Atp6p) and 8 (Atp8p) of th...
gi|207340243 - gi|207340243|gb|EDZ68655.1| YPR155Cp-like protein [Saccharomyces cerevisiae AWRI1631]
NCA2_YEAST - Nuclear control of ATPase protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NCA2...
0.0 [1..616] [1..616]
nca2 - mitochondrial protein Nca2
NCA2_SCHPO - Nuclear control of ATPase protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nca2 P...
0.0 [136..610] [99..569]
gi|26452571 - gi|26452571|dbj|BAC43370.1| unknown protein [Arabidopsis thaliana]
0.0 [159..614] [94..596]
gi|50920715, gi|... - gi|50920715|ref|XP_470718.1| unknown protein [Oryza sativa], gi|18921313|gb|AAL82518.1|AC084766_4 un...
0.0 [229..613] [155..594]
gi|85106724 - gi|85106724|ref|XP_962241.1| hypothetical protein [Neurospora crassa OR74A]
gi|28923841, gi|... - gi|32411555|ref|XP_326258.1| hypothetical protein [Neurospora crassa], gi|28923841|gb|EAA33005.1| hy...
0.0 [136..614] [139..669]

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Predicted Domain #1
Region A:
Residues: [1-212]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIINRRILKS FEEISHSLEE SLREVAFDSQ QQLIQDVREE NEELSRLQDQ LQLIRSIVEK  60
   61 ICISIKTDNI DSYCSVPFDL LYNICKDIAD PSSFEDGDLQ YLVSQAIFEY IILLCYYSVT 120
  121 NECVQGLPAV YEAEQYYKTV SDSILKSFLY CLQNSVSTIR LLSQTVLKDV NKKKLSHQKW 180
  181 SLKALSVDLL EKIRPRINKF MVIRNFRFVG LP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [213-616]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKPIEIASLV SDIPRGIVHE RLDMVTQSSK YYTIKLGQLI TEFDQQPEEN GMFTEVHLPN  60
   61 YERRLKSLQD FFGLAMSDSN LLDVIRCSAK FHKDHPLRRF TKPSILTRYW PSILLCLLYG 120
  121 PSSVMSLWNS RYFIQDFIKT NVVDFAKGLI LNWLWAPLKQ VWSTVKHDEG SAISVTSQET 180
  181 LNSDMDSLTR MIVSFVVDNS DSTSNSPIDP ILLSTKVEHG DLTEFMEIYE TQLHHPIKNI 240
  241 ATGGLVRSLL IQLQKTKVDG SMALNGIDKM LKSQQLVFGV VALSPALVIL YSSIVALKRF 300
  301 VKLGNVWSNE KRYREQISIS LNNVERVLNY SKQGADADEE HLNQGLLVIE VSNLYKLGSF 360
  361 LIPRSRKKEW FRDVEELVDT NLDSGAHINV VNRIYHVYGR FLIH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [377-546]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VKHDEGSAIS VTSQETLNSD MDSLTRMIVS FVVDNSDSTS NSPIDPILLS TKVEHGDLTE  60
   61 FMEIYETQLH HPIKNIATGG LVRSLLIQLQ KTKVDGSMAL NGIDKMLKSQ QLVFGVVALS 120
  121 PALVILYSSI VALKRFVKLG NVWSNEKRYR EQISISLNNV ERVLNYSKQG 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [547-616]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADADEEHLNQ GLLVIEVSNL YKLGSFLIPR SRKKEWFRDV EELVDTNLDS GAHINVVNRI  60
   61 YHVYGRFLIH 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle