YRC Public Data Repository - Protein Structure Prediction

Protein:	YPR148C
Organism:	Saccharomyces cerevisiae
Length:	435 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPR148C.

Description	E-value	Query Range	Subject Range
gi\|207340246 - gi\|207340246\|gb\|EDZ68656.1\| YPR148Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190408071 - gi\|190408071\|gb\|EDV11336.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] YP148_YEAST - Uncharacterized protein YPR148C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPR148C ... YPR148C - Protein of unknown function that may interact with ribosomes, based on co-purification experiments; ...	0.0	[1..435]	[1..435]
mug64 - conserved fungal protein gi\|19114132 - gi\|19114132\|ref\|NP_593220.1\| hypothetical protein SPAC56F8.05c [Schizosaccharomyces pombe 972h-]	7.0E-71	[49..285]	[33..232]

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Predicted Domain #1

Region A:
Residues: [1-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGYFSGFSL NKITDSIATA AHKTQDTLNN ALANANVNLN DPQTRLSIKS RTRFVQESLG  60
   61 TVSDISKLPP QYQFLEKKSD SLEKVCKRIL LVSKTFEVEG YDYPPNLTES ISDWWSLNKD 120
  121 GWFGSKKSES STKKKGSNHD DAFLPRSFAQ AISKAAVDCE CEFQNLEHNE KAELKKKKES 180
  181 IKTAQTTEAQ GADHNEEDEE DEEDEEDDED LSNLIKVFDS WSTCYKNIDE GKAEMDSMMV 240
  241 KEFNKKLETL INQDFKKVHD LRKKVEESRL KFDTMRYEVK AKEAELEAKK AEAT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [295-435]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEAHSKDVSA KDISANTTTS FDETPSTEDE KPKSEGAEEE SKKEANEPTV DDVADRKEDL  60
   61 KSNKVNDEPP IEESEDNKLL EKLEDEFVSN TTAAVETMEE ITDSSEILGL IKLFQNFQLV 120
  121 YFRQCVQEVE ANLKVLNGLE I

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits