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View Structure Prediction Details

Protein: SCD6
Organism: Saccharomyces cerevisiae
Length: 349 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCD6.

Description E-value Query
Range
Subject
Range
SCD6 - Protein containing an Lsm domain, may bind RNA and have a role in RNA processing; overproduction sup...
SCD6_YEAST - Protein SCD6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCD6 PE=1 SV=1
4.0E-88 [1..349] [1..349]
gi|26251874 - gi|26251874|gb|AAH40823.1| Lsm14b protein [Mus musculus]
2.0E-77 [2..281] [73..417]
ENSPTRT00000025534 - null
LSM14B - LSM14B, SCD6 homolog B (S. cerevisiae)
1.0E-75 [2..281] [7..351]
car-1 - status:Confirmed UniProt:Q9XW17 protein_id:CAA22317.1
6.0E-75 [2..335] [5..322]
gi|47550811, gi|... - gi|47550811|ref|NP_999937.1| hypothetical protein LOC406800 isoform 1 [Danio rerio], gi|28502802|gb|...
6.0E-74 [2..278] [5..375]
L14AB_XENLA - Protein LSM14 homolog A-B OS=Xenopus laevis GN=lsm14a-b PE=2 SV=1
5.0E-71 [2..277] [5..398]

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Predicted Domain #1
Region A:
Residues: [1-189]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQYIGKTIS LISVTDNRYV GLLEDIDSEK GTVTLKEVRC FGTEGRKNWG PEEIYPNPTV  60
   61 YNSVKFNGSE VKDLSILDAN INDIQPVVPQ MMPPASQFPP QQAQSPPQAQ AQAHVQTNPQ 120
  121 VPKPESNVPA AVAGYGVYTP TSTETATASM NDKSTPQDTN VNSQSRERGK NGENEPKYQR 180
  181 NKNRSSNRP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term Confidence Notes
nucleic acid binding 2.51705668632443 bayes_pls_golite062009
binding 1.99976233340317 bayes_pls_golite062009
1.84806098577575 bayes_pls_golite062009
RNA binding 1.49949321414131 bayes_pls_golite062009
protein binding 0.418315253537627 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [190-349]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQSNRNFKVD IPNEDFDFQS NNAKFTKGDS TDVEKEKELE SAVHKQDESD EQFYNKKSSF  60
   61 FDTISTSTET NTNMRWQEEK MLNVDTFGQA SARPRFHSRG LGRGRGNYRG NRGNRGRGGQ 120
  121 RGNYQNRNNY QNDSGAYQNQ NDSYSRPANQ FSQPPSNVEF 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [199-349]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DIPNEDFDFQ SNNAKFTKGD STDVEKEKEL ESAVHKQDES DEQFYNKKSS FFDTISTSTE  60
   61 TNTNMRWQEE KMLNVDTFGQ ASARPRFHSR GLGRGRGNYR GNRGNRGRGG QRGNYQNRNN 120
  121 YQNDSGAYQN QNDSYSRPAN QFSQPPSNVE F

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle