YRC Public Data Repository - Protein Structure Prediction

Protein:	YLH47
Organism:	Saccharomyces cerevisiae
Length:	454 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLH47.

Description	E-value	Query Range	Subject Range
gi\|1762146 - gi\|1762146\|gb\|AAB70096.1\| Mrs7p [Saccharomyces cerevisiae]	545.0	[0..1]	[454..1]
LETM1 - leucine zipper-EF-hand containing transmembrane protein 1 gi\|123993861 - gi\|123993861\|gb\|ABM84532.1\| leucine zipper-EF-hand containing transmembrane protein 1 [synthetic con...	482.0	[0..21]	[444..89]
gi\|28279468 - gi\|28279468\|gb\|AAH46326.1\| Similar to leucine zipper-EF-hand containing transmembrane protein 1 [Mus...	479.0	[0..21]	[447..88]
LETM1_BOVIN - LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Bos taurus GN=LETM1 PE=2 SV=1	474.0	[0..20]	[444..74]
LETM1_RAT - LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Rattus norvegicus GN=Letm1 PE=1 SV=1	469.0	[0..21]	[444..88]
gi\|73951795 - gi\|73951795\|ref\|XP_545925.2\| PREDICTED: similar to Leucine zipper-EF-hand containing transmembrane p...	462.0	[0..21]	[444..89]

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Predicted Domain #1

Region A:
Residues: [1-354]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKYRSLPIK RAIHHPAPGI TPISPRIMVS RLRVIPSFNL KFNRWNSSVP ESSKKELKTT  60
   61 DGNQESASKV SPVKEKEKVP FKVKMQKALR HYWDGSKLLG LEIKISSKLL MKSAAGYPLT 120
  121 RRENLQLKRT TQDIVRLVPF AAFLIIPFAE LLLPFALKLF PNLLPSTYES SKKRENKLEN 180
  181 LRNTRKLMSE IIKNNKSHFK PNNISEEQKA LFNRFYTHVR ATGVPESRQQ LIEVARLFTD 240
  241 DTVLDNVTRP YLIALAKYMN LQPFGTDVML RYRIRYKMLE LKKDDLSIYY EDAEQLSLSE 300
  301 LKTACASRGI RSVDVEPSVL YSNLRLWLNM RLKDKIPSTL LIMATAYNYG NVQS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [355-454]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KESLYDALCD VLIGIPDELY HEVKVNVVKE DEASAKQKLK QLREQEEIMK EEEQQEENAI  60
   61 VSVKDELSLD DQDKNIDAAA PDVKPHDTKP IGEAAAIKEK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits