| Protein: | PRE2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 287 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRE2.
| Description | E-value | Query Range |
Subject Range |
|
|
7.0E-81 | [1..287] | [1..287] |
|
|
8.0E-73 | [30..277] | [29..272] |
|
|
2.0E-72 | [46..272] | [4..234] |
|
|
6.0E-72 | [31..277] | [13..257] |
|
|
2.0E-71 | [3..280] | [4..278] |
|
|
2.0E-71 | [46..273] | [4..235] |
|
|
6.0E-71 | [31..277] | [24..268] |
|
|
6.0E-71 | [31..277] | [29..273] |
|
|
6.0E-71 | [26..280] | [21..272] |
|
Region A: Residues: [1-65] |
1 11 21 31 41 51
| | | | | |
1 MQAIADSFSV PNRLVKELQY DNEQNLESDF VTGASQFQRL APSLTVPPIA SPQQFLRAHT 60
61 DDSRN
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.679 | a.4.1 | Homeodomain-like |
| View | Download | 0.478 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.471 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.479 | a.4.1 | Homeodomain-like |
| View | Download | 0.457 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.453 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.448 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.426 | a.74.1 | Cyclin-like |
| View | Download | 0.383 | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.371 | a.3.1 | Cytochrome c |
| View | Download | 0.355 | a.50.1 | Anaphylotoxins (complement system) |
| View | Download | 0.350 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.305 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.274 | a.20.1 | PGBD-like |
| View | Download | 0.269 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.260 | a.17.1 | p8-MTCP1 |
| View | Download | 0.254 | a.4.1 | Homeodomain-like |
| View | Download | 0.252 | a.64.1 | Saposin |
| View | Download | 0.225 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.215 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.215 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.213 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.203 | a.140.2 | SAP domain |
|
Region A: Residues: [66-287] |
1 11 21 31 41 51
| | | | | |
1 PDCKIKIAHG TTTLAFRFQG GIIVAVDSRA TAGNWVASQT VKKVIEINPF LLGTMAGGAA 60
61 DCQFWETWLG SQCRLHELRE KERISVAAAS KILSNLVYQY KGAGLSMGTM ICGYTRKEGP 120
121 TIYYVDSDGT RLKGDIFCVG SGQTFAYGVL DSNYKWDLSV EDALYLGKRS ILAAAHRDAY 180
181 SGGSVNLYHV TEDGWIYHGN HDVGELFWKV KEEEGSFNNV IG
|
| Detection Method: | |
| Confidence: | 1302.69897 |
| Match: | 1g0uK_ |
| Description: | Proteasome beta subunit (catalytic) |
Matching Structure (courtesy of the PDB): |
|
