| Protein: | MRL1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 381 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRL1.
| Description | E-value | Query Range |
Subject Range |
|
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4.0E-97 | [1..381] | [1..381] |
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3.0E-75 | [3..376] | [1324..1666] |
|
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7.0E-75 | [3..376] | [1324..1666] |
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2.0E-73 | [3..376] | [1270..1612] |
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2.0E-73 | [3..376] | [1333..1675] |
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3.0E-73 | [3..376] | [1271..1613] |
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9.0E-73 | [3..376] | [1313..1655] |
|
Region A: Residues: [1-59] |
1 11 21 31 41 51
| | | | | |
1 MLKRSSLIYL SCVLIITIPI LLHVYNGPGL SHEANEHRAS HKQKRTLANP DKPKSENDE
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.269 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.316 | a.4.1 | Homeodomain-like |
| View | Download | 0.272 | a.77.1 | DEATH domain |
| View | Download | 0.263 | a.50.1 | Anaphylotoxins (complement system) |
| View | Download | 0.289 | a.140.4 | Recombination endonuclease VII, C-terminal and dimerization domains |
| View | Download | 0.245 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.234 | a.4.2 | Methylated DNA-protein cysteine methyltransferase, C-terminal domain |
| View | Download | 0.203 | a.35.1 | lambda repressor-like DNA-binding domains |
|
Region A: Residues: [60-229] |
1 11 21 31 41 51
| | | | | |
1 DLFCAVTNPV TGSYIDLSQL SSTPNKLREG QKQISGNNKH ESSKTKWSVR GWGYDTNFTL 60
61 GICSSPVGEA ESQQLSNLTG AFYVDQLNEN NLVSIGDFST RPALVGGSTA KKLTLKYENG 120
121 SMCPNGKDKK ATLLNFVCDK EIQSKAQISY IGNLHNCSYF FEVRSIHACP
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| Detection Method: | |
| Confidence: | 27.39794 |
| Match: | 1c39A_ |
| Description: | Cation-dependent mannose 6-phosphate receptor, extracytoplasmic domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [230-381] |
1 11 21 31 41 51
| | | | | |
1 TSNKKNEVNV LGIFIGIFAI FFLVEFAGRR WIYAKLNRHL KNDDELHDIS PSLNEQPHWD 60
61 LIEDGSRWSK FFNGIIKTTR RFTKSLMRSL VRGRNSRQGG IRLRSSPSAS SSSLANREFF 120
121 RDMEAQNEII DSLDINSHTT ESDHPTLADN SV
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| Detection Method: | |
| Confidence: | 24.0 |
| Match: | 1e6fA_ |
| Description: | Cation-independent mannose-6-phosphate receptor (MIR-receptor) |
Matching Structure (courtesy of the PDB): |
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