YRC Public Data Repository - Protein Structure Prediction

Protein:	YPR063C
Organism:	Saccharomyces cerevisiae
Length:	140 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPR063C.

Description	E-value	Query Range	Subject Range
gi\|49524787 - gi\|49524787\|emb\|CAG58393.1\| unnamed protein product [Candida glabrata] gi\|49524787, gi\|... - gi\|50286107\|ref\|XP_445482.1\| unnamed protein product [Candida glabrata], gi\|49524787\|emb\|CAG58393.1\|...	161.0	[0..1]	[120..1]
gi\|32420371, gi\|... - gi\|32420371\|ref\|XP_330629.1\| predicted protein [Neurospora crassa], gi\|28927100\|gb\|EAA36057.1\| predi... gi\|85117646 - gi\|85117646\|ref\|XP_965293.1\| hypothetical protein NCU03193 [Neurospora crassa OR74A]	139.0	[0..5]	[102..6]
gi\|88182254, gi\|... - gi\|88182254\|gb\|EAQ89722.1\| hypothetical protein CHGG_06341 [Chaetomium globosum CBS 148.51], gi\|1161...	135.0	[0..5]	[108..267]
gi\|149210255, gi... - gi\|86196560\|gb\|EAQ71198.1\| hypothetical protein MGCH7_ch7g605 [Magnaporthe grisea 70-15], gi\|3997076...	115.0	[0..2]	[94..3]
gi\|46128445, gi\|... - gi\|46128445\|ref\|XP_388776.1\| hypothetical protein FG08600.1 [Gibberella zeae PH-1], gi\|42549785\|gb\|E...	107.0	[0..5]	[118..1215]
gi\|49094836, gi\|... - gi\|67537144\|ref\|XP_662346.1\| hypothetical protein AN4742.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	97.0	[0..5]	[100..6]
gi\|49647044, gi\|... - gi\|50547417\|ref\|XP_501178.1\| YALI0B21362p [Yarrowia lipolytica], gi\|49647044\|emb\|CAG83431.1\| unnamed... gi\|49647044 - gi\|49647044\|emb\|CAG83431.1\| YALI0B21362p [Yarrowia lipolytica]	86.0	[0..3]	[110..1]
gi\|49656707 - gi\|49656707\|emb\|CAG89408.1\| DEHA2F15576p [Debaryomyces hansenii] gi\|50424895, gi\|... - gi\|50424895\|ref\|XP_461038.1\| hypothetical protein DEHA0F16852g [Debaryomyces hansenii CBS767], gi\|49...	84.0	[0..6]	[109..5]
gi\|44982282, gi\|... - gi\|45187544\|ref\|NP_983767.1\| ADL329Wp [Ashbya gossypii ATCC 10895], gi\|44982282\|gb\|AAS51591.1\| ADL32... gi\|44982282 - gi\|44982282\|gb\|AAS51591.1\| ADL329Wp [Ashbya gossypii ATCC 10895]	80.0	[0..15]	[109..18]
gi\|49641035, gi\|... - gi\|50303911\|ref\|XP_451903.1\| unnamed protein product [Kluyveromyces lactis], gi\|49641035\|emb\|CAH0229... gi\|49641035 - gi\|49641035\|emb\|CAH02296.1\| KLLA0B08415p [Kluyveromyces lactis]	80.0	[0..1]	[130..1]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLNNVARPD LCVSYKKIAP PKGLYSATPS ISGVVNQSMP MAAIFLRNKF IAWFSLIQSV  60
   61 HYYLNTDEDI IVAYKENKAP SPMDQPPAIK LFMSLIGLCV CYMNLVFPQQ IAQPSSSGSK 120
  121 GNTETTIETT TEVETETAKQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits