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View Structure Prediction Details

Protein: BRR1
Organism: Saccharomyces cerevisiae
Length: 341 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BRR1.

Description E-value Query
Range
Subject
Range
BRR1_YEAST - Pre-mRNA-splicing factor BRR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BRR1 PE=1 ...
BRR1 - snRNP protein component of spliceosomal snRNPs, required for pre-mRNA splicing and snRNP biogenesis;...
gi|207340360 - gi|207340360|gb|EDZ68734.1| YPR057Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|190407995 - gi|190407995|gb|EDV11260.1| spliceosomal snRNP component [Saccharomyces cerevisiae RM11-1a]
0.0 [1..341] [1..341]

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Predicted Domain #1
Region A:
Residues: [1-341]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRGESQAPD AIFGQSRAFA LSDSSVNPDV IEYLKSVRQE ALRTNAISIK NHMNLQKRTR  60
   61 HKSSMYDDED EGALKRHAIS PSLIRLQRNV EIWVRWFNSV KATVLTNAYE FTGYEDETLD 120
  121 LLLLFLKNYL EDMPSKCTTV EKIISVLNQH SFPEKAEEKE ENLQIDEEWA KNILVRLEKT 180
  181 KIDSVEDVKK VITEGDKHEL VGYNQWFQYL INNEPQHTTF HEKITSKQLW VLIKYMSNTW 240
  241 IKEIHKKGRH YRRLQDWLFY ILVHTPERVT AEYTSILRDL GKKCLELIQK KPVEAHENKI 300
  301 TLPKEMAELN VEIPAAVENM TITELTVSVI AVNYGQKDLI E

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle