| Protein: | VMA13 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 478 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VMA13.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [5..478] | [13..444] |
|
|
0.0 | [2..478] | [8..447] |
|
|
0.0 | [2..478] | [8..465] |
|
|
0.0 | [2..478] | [8..465] |
|
|
0.0 | [2..478] | [8..465] |
|
|
0.0 | [2..478] | [5..443] |
|
Region A: Residues: [1-158] |
1 11 21 31 41 51
| | | | | |
1 MGATKILMDS THFNEIRSII RSRSVAWDAL ARSEELSEID ASTAKALESI LVKKNIGDGL 60
61 SSSNNAHSGF KVNGKTLIPL IHLLSTSDNE DCKKSVQNLI AELLSSDKYG DDTVKFFQED 120
121 PKQLEQLFDV SLKGDFQTVL ISGFNVVSLL VQNGLHNV
|
| Detection Method: |  |
| Confidence: | 10142.0 |
| Match: | 1ho8A_ |
| Description: | Regulatory subunit H of the V-type ATPase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| hydrogen ion transmembrane transporter activity | 4.95682565184071 | bayes_pls_golite062009 |
| monovalent inorganic cation transmembrane transporter activity | 4.85364536397482 | bayes_pls_golite062009 |
| proton-transporting ATPase activity, rotational mechanism | 4.07598420103891 | bayes_pls_golite062009 |
| inorganic cation transmembrane transporter activity | 3.97002944013769 | bayes_pls_golite062009 |
| binding | 2.4389817190572 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 1.67825644894471 | bayes_pls_golite062009 |
| protein binding | 1.63705839411934 | bayes_pls_golite062009 |
| cation-transporting ATPase activity | 1.42177298480378 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.878543655311892 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.488813981504368 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 0.409276623620829 | bayes_pls_golite062009 |
| nucleic acid binding | 0.221901941018475 | bayes_pls_golite062009 |
|
Region A: Residues: [159-239] |
1 11 21 31 41 51
| | | | | |
1 KLVEKLLKNN NLINILQNIE QMDTCYVCIR LLQELAVIPE YRDVIWLHEK KFMPTLFKIL 60
61 QRATDSQLAT RIVATNSNHL G
|
| Detection Method: | |
| Confidence: | 10142.0 |
| Match: | 1ho8A_ |
| Description: | Regulatory subunit H of the V-type ATPase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [240-353] |
1 11 21 31 41 51
| | | | | |
1 IQLQYHSLLL IWLLTFNPVF ANELVQKYLS DFLDLLKLVK ITIKEKVSRL CISIILQCCS 60
61 TRVKQHKKVI KQLLLLGNAL PTVQSLSERK YSDEELRQDI SNLKEILENE YQEL
|
| Detection Method: | |
| Confidence: | 10142.0 |
| Match: | 1ho8A_ |
| Description: | Regulatory subunit H of the V-type ATPase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [354-478] |
1 11 21 31 41 51
| | | | | |
1 TSFDEYVAEL DSKLLCWSPP HVDNGFWSDN IDEFKKDNYK IFRQLIELLQ AKVRNGDVNA 60
61 KQEKIIIQVA LNDITHVVEL LPESIDVLDK TGGKADIMEL LNHSDSRVKY EALKATQAII 120
121 GYTFK
|
| Detection Method: | |
| Confidence: | 10142.0 |
| Match: | 1ho8A_ |
| Description: | Regulatory subunit H of the V-type ATPase |
| Matching Structure (courtesy of the PDB): |
|
