YRC Public Data Repository - Protein Structure Prediction

Protein:	ATP20
Organism:	Saccharomyces cerevisiae
Length:	115 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP20.

Description	E-value	Query Range	Subject Range
gi\|32408687, gi\|... - gi\|32408687\|ref\|XP_324824.1\| predicted protein [Neurospora crassa], gi\|28927597\|gb\|EAA36548.1\| predi... gi\|85074833 - gi\|85074833\|ref\|XP_965784.1\| hypothetical protein NCU00644.1 [Neurospora crassa OR74A]	166.0	[0..2]	[112..66]
gi\|116182126, gi... - gi\|88185988\|gb\|EAQ93456.1\| hypothetical protein CHGG_01691 [Chaetomium globosum CBS 148.51], gi\|1161...	129.0	[0..2]	[112..76]
gi\|39950629, gi\|... - gi\|39950629\|ref\|XP_363306.1\| hypothetical protein MGG_01232 [Magnaporthe grisea 70-15], gb\|EAA55581....	126.0	[0..2]	[115..69]
gi\|50291795, gi\|... - gi\|50291795\|ref\|XP_448330.1\| unnamed protein product [Candida glabrata], gi\|49527642\|emb\|CAG61291.1\|... gi\|49527642 - gi\|49527642\|emb\|CAG61291.1\| unnamed protein product [Candida glabrata]	125.0	[0..1]	[115..1]
gi\|49642112 - gi\|49642112\|emb\|CAH01830.1\| KLLA0C17446p [Kluyveromyces lactis] gi\|50306035, gi\|... - gi\|50306035\|ref\|XP_452979.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642112\|emb\|CAH0183...	115.0	[0..1]	[115..1]
gi\|42545543, gi\|... - gi\|46107546\|ref\|XP_380832.1\| hypothetical protein FG00656.1 [Gibberella zeae PH-1], gi\|42545543\|gb\|E...	115.0	[0..2]	[113..66]
gi\|70996478, gi\|... - gi\|70996478\|ref\|XP_752994.1\| mitochondrial F1F0-ATP synthase g subunit [Aspergillus fumigatus Af293]... gi\|159131728 - gi\|159131728\|gb\|EDP56841.1\| mitochondrial F1F0-ATP synthase g subunit, putative [Aspergillus fumigat...	115.0	[0..2]	[115..72]
gi\|169767168 - gi\|169767168\|ref\|XP_001818055.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83765910 - gi\|83765910\|dbj\|BAE56053.1\| unnamed protein product [Aspergillus oryzae]	114.0	[0..2]	[115..72]
gi\|115397523, gi... - gi\|115397523\|ref\|XP_001214353.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	113.0	[0..2]	[115..72]
gi\|49086002, gi\|... - gi\|67517341\|ref\|XP_658547.1\| hypothetical protein AN0943.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	108.0	[0..2]	[113..71]

Back

Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRIQNYTS GLVSKANLLS SKALYYGKVG AEISKQIYLK EGLQPPTVAQ FKSVYSNLYK  60
   61 QSLNFALKPT EVLSCLKNIQ KNELLKYGAY GIQLIGFYSV GEIIGRRKLV GYKHH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	50.180456
Match:	PF04718.6
Description:	No description for PF04718.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.924	N/A	N/A	a.1.1	Globin-like
View	Download	0.924	N/A	N/A	a.1.1	Globin-like
View	Download	0.866	N/A	N/A	a.1.1	Globin-like
View	Download	0.821	N/A	N/A	a.1.1	Globin-like
View	Download	0.816	N/A	N/A	a.1.1	Globin-like
View	Download	0.752	N/A	N/A	a.1.1	Globin-like
View	Download	0.752	N/A	N/A	a.1.1	Globin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits