| Protein: | RLF2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 606 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RLF2.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-84 | [1..606] | [1..606] |
|
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2.0E-54 | [5..362] | [916..1274] |
|
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2.0E-46 | [5..416] | [916..1328] |
|
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4.0E-46 | [5..416] | [917..1329] |
|
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5.0E-46 | [5..435] | [919..1347] |
|
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8.0E-46 | [5..435] | [920..1348] |
|
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1.0E-45 | [5..471] | [921..1384] |
|
Region A: Residues: [1-264] |
1 11 21 31 41 51
| | | | | |
1 MEQHLKSIPL QDDTKKKGIL SFFQNTTTVK SNKFLTKEKD VITLDDPKED VSGPMIETVK 60
61 QETMKSINKE CADEMKTTPK KANAEDKLLC YKNSPIQSTK YDRNTNKQVP NGNIIAIETK 120
121 SRSSSPCSKR ELSSSKKEEA KREKELKKQQ RAEEKHRKEL LRQEEKKKKE LKVEEERQRR 180
181 AELKKQKEEE KRRKEEARLE AKRRKEEERL KKEEEIRLKE EAKERAQSRI GNFFKKLSDS 240
241 NTPVVEKSDY EKFFLPFYAK DGVR
|
| Detection Method: |  |
| Confidence: | 27.0 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [265-483] |
1 11 21 31 41 51
| | | | | |
1 VSNKWKLTKV ELEGSKRKID DELLNSKDKT SSDDLLNWLQ SRRLPRGHKI KRKAVDVLQQ 60
61 MPLKEKTDDE LQSLLAQVPH KYIKFYENVR PPFIGTYSMD FTLPPNDPFS TKGTGFNYDY 120
121 DSDVEWVNEE EEGEVDNLES GEEEEEEEDD EDVPSEGEFD GFLDSEENSD LDGLPCAKRK 180
181 FVGPLIPTIC LKSNFENLSE ENKRYLQQLK AEVIIETDG
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [484-606] |
1 11 21 31 41 51
| | | | | |
1 PIDPFKEPKT SSLPSKRSNS DLQAQTASQS QSPEKKQKAM ITDPMDLLRL FDGVQDSTFS 60
61 LGTVTEIAQK NLPQYNKQTI KNTIKEYAIR SSGKGDLPRK WVIKDAQNWE NLRANANMPT 120
121 PSL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.393 | a.74.1 | Cyclin-like |
| View | Download | 0.402 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.407 | a.4.3 | ARID-like |
| View | Download | 0.333 | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.342 | a.74.1 | Cyclin-like |
| View | Download | 0.331 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.329 | a.4.12 | TrpR-like |
| View | Download | 0.306 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.294 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.292 | d.79.5 | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF |
| View | Download | 0.280 | c.45.1 | (Phosphotyrosine protein) phosphatases II |
| View | Download | 0.271 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.263 | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.255 | d.79.1 | YjgF-like |
| View | Download | 0.253 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.252 | a.4.1 | Homeodomain-like |
| View | Download | 0.247 | a.74.1 | Cyclin-like |
| View | Download | 0.246 | a.64.1 | Saposin |
| View | Download | 0.233 | a.1.1 | Globin-like |
| View | Download | 0.224 | c.50.1 | Macro domain-like |
| View | Download | 0.216 | a.1.1 | Globin-like |
| View | Download | 0.213 | a.39.1 | EF-hand |
| View | Download | 0.209 | a.118.8 | TPR-like |
| View | Download | 0.209 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.207 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.204 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.202 | a.4.1 | Homeodomain-like |
|
Region A: Residues: [418-514] |
1 11 21 31 41 51
| | | | | |
1 PSEGEFDGFL DSEENSDLDG LPCAKRKFVG PLIPTICLKS NFENLSEENK RYLQQLKAEV 60
61 IIETDGPIDP FKEPKTSSLP SKRSNSDLQA QTASQSQ
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [515-606] |
1 11 21 31 41 51
| | | | | |
1 SPEKKQKAMI TDPMDLLRLF DGVQDSTFSL GTVTEIAQKN LPQYNKQTIK NTIKEYAIRS 60
61 SGKGDLPRKW VIKDAQNWEN LRANANMPTP SL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.393 | a.74.1 | Cyclin-like |
| View | Download | 0.402 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.407 | a.4.3 | ARID-like |
| View | Download | 0.381 | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.342 | a.74.1 | Cyclin-like |
