Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPR003C.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [32..714] | [5..653] |
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0.0 | [32..714] | [4..657] |
|
|
0.0 | [1..754] | [1..754] |
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0.0 | [32..714] | [4..657] |
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0.0 | [32..714] | [4..657] |
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0.0 | [32..714] | [4..655] |
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0.0 | [32..714] | [4..655] |
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0.0 | [35..716] | [4..650] |
|
Region A: Residues: [1-90] |
1 11 21 31 41 51
| | | | | |
1 MTSNNSLLGR GRMSYSSTAP PRFKRSVDQR DTFSDNFDYD KDSSNRGRTY IAASNSTTGV 60
61 PPPNNSRSGC TNNTNNTNNT SNTSNTNNND
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.442 | c.13.2 | Anti-sigma factor antagonist SpoIIaa |
|
Region A: Residues: [91-195] |
1 11 21 31 41 51
| | | | | |
1 SVDENTVFET LPYYLPCFSW LPEYTFNKLW GDVIAGISVA SFQIPLALSY TTSIAHVPPL 60
61 CGLYSLAISP FVYGILGSVP QMIVGPESAI SLVVGQAVES ITLHK
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.994 | N/A | N/A | a.24.4 | Hemerythrin |
| View | Download | 0.994 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.987 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.981 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.978 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
|
Region A: Residues: [196-554] |
1 11 21 31 41 51
| | | | | |
1 ENVSLIDIST VITFVSGTIL LFSGISRFGF LGNVLSKALL RGFISSVGLV MIINSLISEL 60
61 KLDKFLVSLP QHYHTPFEKI LFLIDYAPAQ YHIPTAIFSG CCLIVLFLTR LLKRKLMKYH 120
121 KSAIFFPDIL LVVIVTILIS MKFNLKHRYG ISIIGDFSMD NFDELKNPLT RPRRKLIPDL 180
181 FSASLIVAML GFFESTTASK SLGTTYNLTV SSNRELVALG FMNIVISLFG ALPAFGGYGR 240
241 SKINALSGAQ SVMSGVFMGV ITLITMNLLL QFVHYIPNCV LSVITTIIGI SLLEEVPGDI 300
301 KFHLRCGGFS ELFVFAVTFC TTIFYSIEAG ICIGCVYSII NIIKHSAKSR IQILARVAG
|
| Detection Method: | |
| Confidence: | 112.05061 |
| Match: | PF00916 |
| Description: | Sulfate transporter family |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [555-613] |
1 11 21 31 41 51
| | | | | |
1 TSNFTNLDDY MMNMKRNSLD VEGTEEIEGC MIVRIPEPLT FTNSEDLKQR LDRIERYGS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.460 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.368 | a.20.1 | PGBD-like |
| View | Download | 0.424 | a.140.2 | SAP domain |
| View | Download | 0.558 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.500 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.365 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.361 | a.20.1 | PGBD-like |
| View | Download | 0.352 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.340 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.310 | a.64.1 | Saposin |
| View | Download | 0.293 | a.140.4 | Recombination endonuclease VII, C-terminal and dimerization domains |
| View | Download | 0.271 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.258 | a.4.1 | Homeodomain-like |
| View | Download | 0.253 | a.28.1 | ACP-like |
| View | Download | 0.247 | a.4.1 | Homeodomain-like |
| View | Download | 0.223 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.209 | a.20.1 | PGBD-like |
| View | Download | 0.205 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.204 | d.59.1 | Ribosomal protein L30p/L7e |
| View | Download | 0.204 | a.140.1 | LEM domain |
| View | Download | 0.201 | a.28.3 | Retrovirus capsid protein C-terminal domain |
|
Region A: Residues: [614-754] |
1 11 21 31 41 51
| | | | | |
1 SKIHPGRKSL RSKDSIKYVI FDLGGMTSID SSAAQVLEEI ITSYKRRNVF IYLVNVSIND 60
61 KVRRRLFKAG VAASVERAQA NNNENNTSNT FSDAGETYSP YFDSIDAALY EIEKMKIKGN 120
121 NVPNNDSESF MSNTLFNSSL V
|
| Detection Method: | |
| Confidence: | 3.0 |
| Match: | 1auz__ |
| Description: | Anti-sigma factor antagonist SpoIIaa |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [578-754] |
1 11 21 31 41 51
| | | | | |
1 TEEIEGCMIV RIPEPLTFTN SEDLKQRLDR IERYGSSKIH PGRKSLRSKD SIKYVIFDLG 60
61 GMTSIDSSAA QVLEEIITSY KRRNVFIYLV NVSINDKVRR RLFKAGVAAS VERAQANNNE 120
121 NNTSNTFSDA GETYSPYFDS IDAALYEIEK MKIKGNNVPN NDSESFMSNT LFNSSLV
|
| Detection Method: | |
| Confidence: | 4.0 |
| Match: | 1auzA |
| Description: | SOLUTION STRUCTURE OF SPOIIAA, A PHOSPHORYLATABLE COMPONENT OF THE SYSTEM THAT REGULATES TRANSCRIPTION FACTOR SIGMA-F OF BACILLUS SUBTILIS, NMR, 24 STRUCTURES |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.9933616198208 | bayes_pls_golite062009 |
| protein binding | 1.73254574073085 | bayes_pls_golite062009 |
