YRC Public Data Repository - Protein Structure Prediction

Protein:	YPL279C
Organism:	Saccharomyces cerevisiae
Length:	375 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPL279C.

Description	E-value	Query Range	Subject Range
YOR390W - Putative protein of unknown function gi\|190407679 - gi\|190407679\|gb\|EDV10946.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] YO390_YEAST - UPF0695 membrane protein YOR390W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOR390W...	0.0	[1..375]	[1..375]
gi\|32411273, gi\|... - gi\|32411273\|ref\|XP_326117.1\| predicted protein [Neurospora crassa], gi\|28924506\|gb\|EAA33630.1\| predi... gi\|85109333 - gi\|85109333\|ref\|XP_962866.1\| hypothetical protein NCU06262 [Neurospora crassa OR74A]	0.0	[11..375]	[158..523]
SPAC977.11, SPBP... - conserved fungal protein, conserved fungal protein YI7B_SCHPO - UPF0695 membrane protein C977.11/PB8B6.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN...	1.0E-97	[21..372]	[4..309]
gi\|253569647, gi... - gi\|253569647\|ref\|ZP_04847056.1\| camphor resistance CrcB protein [Bacteroides sp. 1_1_6], gi\|25184002... CRCB_BACTN - Protein CrcB homolog OS=Bacteroides thetaiotaomicron GN=crcB PE=3 SV=1 CRCB_BACTN - Putative fluoride ion transporter CrcB OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079...	0.005	[251..361]	[15..115]
gi\|25304880 - pir\|\|C98018 crcB protein [imported] - Streptococcus pneumoniae (strain R6) CRCB1_STRR6 - Putative fluoride ion transporter CrcB 1 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=c... gi\|168491213, gi... - gi\|183574470\|gb\|EDT94998.1\| putative crcB protein [Streptococcus pneumoniae CDC0288-04], gi\|16849121... gi\|116076502, gi... - gi\|116515926\|ref\|YP_816617.1\| CrcB protein [Streptococcus pneumoniae D39], gi\|116076502\|gb\|ABJ54222....	0.007	[250..337]	[12..81]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFNPVISNH KLSHYIHVFC TFTTFCILGT ETRQAITALS TYTPAFVTAP TVLWSNCSSC  60
   61 MLMGIMQSLN AYTWMKDHQV LFLGVTTGYC GALSSFSSML LEMFEHSTNL TNGNIANHTK 120
  121 LPNRAYGIME FLSVLLVHLM VSMGSLIFGR QLGKEVIVAY GSSSFSKPYT P

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [172-375]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSDTVKENAG DVDTQEMEKN ILEFKFKTPA PFFKKFFDVV DKLAYALAFP LIILFVVLCA  60
   61 YYENYSRGKW TLPCLFGIFA GFLRYWLAEM FNKTNKKFPL GTFLANVFAT LLIGIFTMVQ 120
  121 RGKKHFSTDI PIVNSLNSCH IVSALISGFC GTLSTISTFI NEGYKLSFIN MLIYYTVSIG 180
  181 ISYCLLVITL GSYAWTRGLT NPIC

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	58.60206
Match:	PF02537
Description:	CrcB-like protein

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits