YRC Public Data Repository - Protein Structure Prediction

Protein:	ATP15
Organism:	Saccharomyces cerevisiae
Length:	62 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP15.

Description	E-value	Query Range	Subject Range
gi\|55243554, gi\|... - gi\|58380900\|ref\|XP_310858.2\| ENSANGP00000012584 [Anopheles gambiae str. PEST], gi\|55243554\|gb\|EAA067...	90.0	[0..1]	[56..30]
gi\|21068676 - gi\|21068676\|emb\|CAD31844.1\| putative epsilon subunit of mitochondrial F1-ATPase [Cicer arietinum]	83.0	[0..4]	[61..10]
ATP5E_ARATH - ATP synthase subunit epsilon, mitochondrial OS=Arabidopsis thaliana GN=At1g51650 PE=1 SV=3	82.0	[0..4]	[61..10]
ATP5E_IPOBA - ATP synthase subunit epsilon, mitochondrial OS=Ipomoea batatas PE=1 SV=2	81.0	[0..4]	[61..10]
gi\|108880366, gi... - gi\|157104381\|ref\|XP_001648382.1\| hypothetical protein AaeL_AAEL004060 [Aedes aegypti], gi\|108880366\|...	80.0	[0..1]	[56..1]
sun-PA - The gene stunted is referred to in FlyBase by the symbol Dmel\sun (CG9032, FBgn0014391). It is a pro... gi\|194202719, gi... - gi\|195553727\|ref\|XP_002076729.1\| GD24676 [Drosophila simulans], gi\|194202719\|gb\|EDX16295.1\| GD24676 ... gi\|220950884, gi... - gi\|220959532\|gb\|ACL92309.1\| sun-PA [synthetic construct], gi\|220950884\|gb\|ACL87985.1\| sun-PA [synthe... gi\|194129492, gi... - gi\|195355447\|ref\|XP_002044203.1\| GM22520 [Drosophila sechellia], gi\|194129492\|gb\|EDW51535.1\| GM22520... gi\|194188258, gi... - gi\|195479017\|ref\|XP_002100734.1\| GE16014 [Drosophila yakuba], gi\|194188258\|gb\|EDX01842.1\| GE16014 [D... gi\|194894162, gi... - gi\|194894162\|ref\|XP_001978021.1\| GG19366 [Drosophila erecta], gi\|190649670\|gb\|EDV46948.1\| GG19366 [D...	80.0	[0..1]	[58..1]

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Predicted Domain #1

Region A:
Residues: [1-62]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAWRKAGIS YAAYLNVAAQ AIRSSLKTEL QTASVLNRSQ TDAFYTQYKN GTAASEPTPI  60
   61 TK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits