YRC Public Data Repository - Protein Structure Prediction

Protein:	YPL264C
Organism:	Saccharomyces cerevisiae
Length:	353 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPL264C.

Description	E-value	Query Range	Subject Range
YPL264C - Putative membrane protein of unknown function; physically interacts with Hsp82p; YPL264C is not an e... YP264_YEAST - Probable transport protein YPL264C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPL26...	3.0E-48	[1..353]	[1..353]
gi\|28203897, gi\|... - gi\|28211456\|ref\|NP_782400.1\| transporter [Clostridium tetani E88], gi\|28203897\|gb\|AAO36337.1\| transp...	2.0E-34	[1..350]	[1..318]
gi\|15073958 - gi\|15073958\|emb\|CAC45599.1\| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021] gi\|15964780 - gi\|15964780\|ref\|NP_385133.1\| hypothetical protein SMc02371 [Sinorhizobium meliloti 1021]	9.0E-34	[11..345]	[6..311]
gi\|23397492, gi\|... - gi\|55661494\|emb\|CAH73399.1\| transmembrane protein 20 [Homo sapiens], gi\|23397492\|ref\|NP_694958.1\| tr...	2.0E-32	[3..332]	[57..362]
gi\|14027156, gi\|... - gi\|14027156\|dbj\|BAB54110.1\| mlr7703 [Mesorhizobium loti MAFF303099], gi\|13476395\|ref\|NP_107965.1\| hy...	6.0E-32	[14..340]	[44..341]
gi\|34497986, gi\|... - gi\|34497986\|ref\|NP_902201.1\| transmembrane protein [Chromobacterium violaceum ATCC 12472], gi\|341038...	5.0E-31	[1..344]	[1..319]
WTR16_ARATH - WAT1-related protein At3g02690, chloroplastic OS=Arabidopsis thaliana GN=At3g02690 PE=2 SV=1	7.0E-31	[20..328]	[128..414]

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Predicted Domain #1

Region A:
Residues: [1-174]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLQRISKDY LKPNYGLILL IVSYFFNSSM VVSTKVLEND PLETSQSRIN PLQILLVRMS  60
   61 ITYCCTLVYM HWNKQSVPDI PWGPAPCRKW LILRGIMGFF GVFGMYFSLM YLSISDAVLI 120
  121 TFMSPTLTIF LSFLLLGEPF SKLEALGSLI SFSGVVLIIR PTFLFGEQTQ GQQS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	11.05061
Match:	PF00892
Description:	Integral membrane protein DUF6

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [175-353]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQDDIVETQN PKLRLIAIGV SLLGVCGLSS VYIIIRYIGN KAHAIMSVSY FSLVTTVVAA  60
   61 LGVLLIPSMS LQLPHSWKQW GLFLNLGISG FIHQILLTMG IQRERAGRGS LMTYTQVIYA 120
  121 VFWDVVLFHH WPNIWTWCGM AVIVSSTIWV INMRASKQNV VATAELLSTS DFELDDLED

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	9.221849
Match:	PF00892
Description:	Integral membrane protein DUF6

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits