YRC Public Data Repository - Protein Structure Prediction

Protein:	BBP1
Organism:	Saccharomyces cerevisiae
Length:	385 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BBP1.

Description	E-value	Query Range	Subject Range
BBP1_YEAST - Spindle pole component BBP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BBP1 PE=1 SV... YPL255W_W303, Bbp1 - BBP1 ORF Verified Protein required for the spindle pole body (SPB) duplication; localizes at the cyt... BBP1 - Protein required for the spindle pole body (SPB) duplication, localized at the central plaque periph...	0.0	[1..385]	[1..385]
gi\|23486146 - gi\|23486146\|gb\|EAA20733.1\| putative 26S proteosome regulatory subunit [Plasmodium yoelii yoelii] gi\|83032729 - gi\|83032729\|ref\|XP_729168.1\| 26S proteosome regulatory subunit [Plasmodium yoelii yoelii str. 17XNL]	0.004	[220..359]	[58..188]
gi\|10944718, gi\|... - gi\|50978814\|ref\|NP_001003112.1\| uveal autoantigen with coiled-coil domains and ankyrin repeats [Cani...	0.005	[200..372]	[983..1165]
gi\|18309198, gi\|... - gi\|18309198\|ref\|NP_561132.1\| exonuclease SbcC [Clostridium perfringens str. 13], gi\|18143873\|dbj\|BAB...	0.007	[215..373]	[614..779]

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Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQEDNTGGG GIFGLFKWTK DALFGTDISP SMKYKDQEER RDRSRYAQDD TNFSMKFGND  60
   61 SNRRSTNLSR SNSWSGLDST LHRKYELLPE YNENGFNSIV NGDHHSKERI RSLRSPAPIV 120
  121 PREPLRNEPT DTFGHRLHTK RRTINELSNS QIPFIPPQED DPLLSKLFNK DGVNEVRRSP 180
  181 YKLSVKDIPG KFPSPLTKRD EIDNYYVRDE DACHKNREYK KAYFDLFAQM DL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [233-385]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSRDLEDLCE DVREQREQFH RNEQTYKQAY EEMRAELVNE LKKSKTLFEN YYSLGQKYKS  60
   61 LKKVLDQTIS HEAELATSRE RLYQEEDLKN FEIQTLKQRL SDLELKYTNL QIEKDMQRDN 120
  121 YESEIHDLLL QLSLRNNERK DTSAGSNIFS TGQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits