| Protein: | SRP68 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 599 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRP68.
| Description | E-value | Query Range |
Subject Range |
|
|
685.0 | [0..3] | [566..59] |
|
|
683.0 | [0..3] | [566..54] |
|
|
672.0 | [0..3] | [566..58] |
|
|
664.0 | [0..24] | [566..78] |
|
|
662.0 | [0..3] | [566..59] |
|
|
661.0 | [0..3] | [566..50] |
|
Region A: Residues: [1-96] |
1 11 21 31 41 51
| | | | | |
1 MVAYSPIIAT YGNRAEQFLE TDSDFAKYHA KLNKKLQHLR SRCHLVTKDT KKYSSKNKYG 60
61 EINSEDYDNK TKLIGVLILL HAERDLALAE TLKLRA
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.791 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.726 | N/A | N/A | a.24.18 | Description not found. |
| View | Download | 0.701 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.671 | N/A | N/A | a.24.28 | Description not found. |
| View | Download | 0.662 | N/A | N/A | a.8.11 | Description not found. |
| View | Download | 0.655 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.614 | N/A | N/A | c.55.4 | Translational machinery components |
| View | Download | 0.546 | N/A | N/A | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.537 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
|
Region A: Residues: [97-227] |
1 11 21 31 41 51
| | | | | |
1 RQRGKLKKSE EKVLSTRLKK ACKTADKLVN VTQNEQQWIT RAQYLAFAKL VHSEYLINGK 60
61 RFKRKDNAKI SNNLALVFAA LEHLKNLSLL AEEVVDNIVN KYQYSLKQYA GNLITTPEIN 120
121 NFIVERVQSD E
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.975 | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.974 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.943 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.943 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.930 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.904 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.904 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.871 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.826 | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.781 | a.24.9 | alpha-catenin/vinculin |
|
Region A: Residues: [228-599] |
1 11 21 31 41 51
| | | | | |
1 NKDDELVKLL LDNGFNMKKI TTSTEDQKVT TNINWRSFNA KIIDAEVAQF LEQGLSIHPT 60
61 QITQYTQRLS KLEKALDRHE FFIANHDDQD DIDEMVENSS ENNQIILAYI KYNILLTSIS 120
121 RERDLFTHLW NQWLKLNTSL PSKLTKYKEM ERIVKNLTKY LSDIMELPGV YSDDELLSQL 180
181 DLCKLYFQLF LNTGCLSVLY QSKGRYMEAL ALYVDAYRRL ENKLSEIESL DEILLPANLL 240
241 SLNSVRSLQK RIENGGNSVI TLAEYEKRNH GGSLGKYDLT VIEKLDSKKI LPTDIQLKNL 300
301 FPLKPKMLPI PSKPTLFDLA FNYITYDKQE PSASQVKDSV TETESISQTP ISNEQTEGEP 360
361 KKKRGFLGLF GR
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
