YRC Public Data Repository - Protein Structure Prediction

Protein:	YAR1
Organism:	Saccharomyces cerevisiae
Length:	200 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAR1.

Description	E-value	Query Range	Subject Range
gi\|28972688 - gi\|28972688\|dbj\|BAC65760.1\| mKIAA1250 protein [Mus musculus]	9.0E-50	[2..200]	[12..188]
KDIS_RAT - Kinase D-interacting substrate of 220 kDa OS=Rattus norvegicus GN=Kidins220 PE=1 SV=2	2.0E-49	[2..200]	[94..270]
gi\|14133247 - gi\|14133247\|dbj\|BAA86564.2\| KIAA1250 protein [Homo sapiens]	3.0E-49	[2..200]	[100..276]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	7.0E-49	[2..200]	[94..271]
gi\|33284837 - gi\|33284837\|emb\|CAE17588.1\| SI:dZ119J18.2 (novel protein similar to rat kinase D-interacting substan...	1.0E-47	[2..200]	[69..279]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLHSEPLDQ EDQDTIILDA RAGDLDSLKD IFTTLVSPEL LSTCKESESD STALHMAAAN  60
   61 GHIETVRYIL ETVSRANSAE DLKAFVNEVN KTGNTALHWA SLNGKLDVVK LLCDEYEADP 120
  121 F

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	119.30103
Match:	1n0rA_
Description:	4ank
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [122-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IRNKFGHDAI FEAENSGKEE VETYFLKKYD VEPEDDEEDT QTEGKNSVQI TKGTEIEQVT  60
   61 KEATEALREE TEKLNINKD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	119.30103
Match:	1n0rA_
Description:	4ank
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits