YRC Public Data Repository - Protein Structure Prediction

Protein:	TFP3
Organism:	Saccharomyces cerevisiae
Length:	164 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TFP3.

Description	E-value	Query Range	Subject Range
gi\|29747890 - gi\|29747890\|gb\|AAH50939.1\| Atp6v0c protein [Mus musculus]	2.0E-38	[4..159]	[31..184]
gi\|27694747 - gi\|27694747\|gb\|AAH43805.1\| MGC64475 protein [Xenopus laevis]	1.0E-36	[1..161]	[51..206]
gi\|190407730 - gi\|190407730\|gb\|EDV10995.1\| vacuolar ATP synthase subunit c' [Saccharomyces cerevisiae RM11-1a] gi\|207340745 - gi\|207340745\|gb\|EDZ68999.1\| YPL234Cp-like protein [Saccharomyces cerevisiae AWRI1631] TFP3 - Vacuolar ATPase V0 domain subunit c', involved in proton transport activity; hydrophobic integral me... VATL2_YEAST - V-type proton ATPase subunit c' OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VMA11 PE... gi\|151942567 - gi\|151942567\|gb\|EDN60913.1\| conserved protein [Saccharomyces cerevisiae YJM789] ORFP:21967 - YPL234C, Contig c381 41750-42244 reverse complement	2.0E-36	[1..164]	[1..164]
gi\|240133937 - gi\|240133937\|gb\|EER33492.1\| vacuolar ATP synthase 16 kDa proteolipid subunit [Candida tropicalis MYA... VATL_CANTR - V-type proton ATPase 16 kDa proteolipid subunit OS=Candida tropicalis GN=VMA3 PE=3 SV=1 gi\|241953253, gi... - gi\|241953253\|ref\|XP_002419348.1\| vacuolar ATP synthase proteolipid subunit, putative [Candida dublin... orf19.5886 - CUP5 CGDID:CAL0002461 Assembly 19, Contig19-10236 (56479, 57259) CDS, translated using codon table 1... gi\|238880844 - gi\|238880844\|gb\|EEQ44482.1\| vacuolar ATP synthase 16 kDa proteolipid subunit [Candida albicans WO-1]	7.0E-36	[8..164]	[2..156]
gi\|33521676, gi\|... - gi\|58585082\|ref\|NP_001011570.1\| vacuolar H+ ATP synthase 16 kDa proteolipid subunit [Apis mellifera]...	9.0E-36	[6..161]	[1..156]
VATL_NEUCR - V-type proton ATPase 16 kDa proteolipid subunit OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A... VATL_NEUCR - V-type proton ATPase 16 kDa proteolipid subunit OS=Neurospora crassa GN=vma-3 PE=2 SV=1	1.0E-35	[8..163]	[2..156]
VATL_NEPNO - V-type proton ATPase 16 kDa proteolipid subunit OS=Nephrops norvegicus PE=2 SV=1	2.0E-35	[6..163]	[1..158]
VATL_TOBAC - V-type proton ATPase 16 kDa proteolipid subunit OS=Nicotiana tabacum PE=2 SV=1	5.0E-35	[5..164]	[1..161]
gi\|113648765, gi... - gi\|77553127\|gb\|ABA95923.1\| V-type ATPase, C subunit [Oryza sativa (japonica cultivar-group)], gi\|125... gi\|15186772 - gi\|15186772\|gb\|AAK91135.1\|AF286464_1 V-ATPase subunit c [Porteresia coarctata]	7.0E-35	[5..164]	[1..161]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTQLASNIY APLYAPFFGF AGCAAAMVLS CLGAAIGTAK SGIGIAGIGT FKPELIMKSL  60
   61 IPVVMSGILA IYGLVVAVLI AGNLS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	12.086186
Match:	PF00137
Description:	ATP synthase subunit C

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [86-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTEDYTLFNG FMHLSCGLCV GFACLSSGYA IGMVGDVGVR KYMHQPRLFV GIVLILIFSE  60
   61 VLGLYGMIVA LILNTRGSE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	23.568636
Match:	PF00137
Description:	ATP synthase subunit C

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits