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View Structure Prediction Details

Protein: NSL1
Organism: Saccharomyces cerevisiae
Length: 216 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NSL1.

Description E-value Query
Range		 Subject
Range
gi|151942568 - gi|151942568|gb|EDN60914.1| component of the MIND kinetochore complex [Saccharomyces cerevisiae YJM7...
NSL1_YEAST - Kinetochore-associated protein NSL1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NSL1...
NSL1 - Essential component of the MIND kinetochore complex (Mtw1p Including Nnf1p-Nsl1p-Dsn1p) which joins ...
gi|190407731 - gi|190407731|gb|EDV10996.1| protein required for cell viability [Saccharomyces cerevisiae RM11-1a]
 6.0E-83 [1..216] [1..216]
MIS14_SCHPO - Kinetochore protein mis14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mis14 PE=1 SV=1
mis14 - kinetochore protein Mis14
 4.0E-44 [23..147] [28..165]

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Predicted Domain #1
Region A:
Residues: [1-132] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQGQSKKLD VTVEQLRSIY HQFHDILEEK TDLHLPKKEY DDDAVRREVQ IQLQEFLLSA  60
   61 MTMASKSLEV VNADTVGKTV KQLIMESQEK YMEPFDLDLN EQVRKMYQEW EDETVKVAQL 120
  121 RQTGPAKINE VY

[Run NCBI BLAST on this sequence.]

Detection Method: Pcons
Confidence: 1.6
Match: 1cunA
Description: Spectrin
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [133-216] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNSKDEYLAQ LDGRIGVLQA RMMQQQSADH DDSTDDADDH INWEHIKQDY VASLNELYQT  60
   61 QQDLPKVRYN VEKVKRLMDF LEED

[Run NCBI BLAST on this sequence.]

Detection Method: Pcons
Confidence: 1.6
Match: 1cunA
Description: Spectrin
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle