YRC Public Data Repository - Protein Structure Prediction

Protein:	PGC1
Organism:	Saccharomyces cerevisiae
Length:	321 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PGC1.

Description	E-value	Query Range	Subject Range
PGC1_YEAST - Phosphatidylglycerol phospholipase C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PGC... PGC1 - Phosphatidyl Glycerol phospholipase C; regulates the phosphatidylglycerol (PG) content via a phospho... gi\|190407757 - gi\|190407757\|gb\|EDV11022.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] gi\|151942595 - gi\|151942595\|gb\|EDN60941.1\| conserved protein [Saccharomyces cerevisiae YJM789]	4.0E-72	[1..321]	[1..321]
gi\|223488779, gi... - gi\|254479407\|ref\|ZP_05092739.1\| Glycerophosphoryl diester phosphodiesterase family protein [Carboxyd... gi\|20807473 - gi\|20807473\|ref\|NP_622644.1\| Glycerophosphoryl diester phosphodiesterase [Thermoanaerobacter tengcon... gi\|20807473, gi\|... - gi\|20807473\|ref\|NP_622644.1\| glycerophosphoryl diester phosphodiesterase [Thermoanaerobacter tengcon...	1.0E-55	[2..253]	[3..241]
gi\|18144079, gi\|... - gi\|18309403\|ref\|NP_561337.1\| glycerophosphodiester phosphodiesterase [Clostridium perfringens str. 1...	2.0E-54	[2..256]	[4..245]
gi\|25487769 - pir\|\|D84112 glycerophosphoryl diester phosphodiesterase glpQ [imported] - Bacillus halodurans (strai... gi\|10176324, gi\|... - gi\|15616262\|ref\|NP_244567.1\| glycerophosphoryl diester phosphodiesterase [Bacillus halodurans C-125]...	4.0E-54	[2..245]	[39..274]
gi\|221312349 - gi\|221312349\|ref\|ZP_03594154.1\| glycerophosphoryl diester phosphodiesterase [Bacillus subtilis subsp... GLPQ_BACSU - Glycerophosphoryl diester phosphodiesterase OS=Bacillus subtilis (strain 168) GN=glpQ PE=3 SV=1 GLPQ_BACSU - Glycerophosphoryl diester phosphodiesterase OS=Bacillus subtilis GN=glpQ PE=3 SV=1 gi\|221321546 - gi\|221321546\|ref\|ZP_03602840.1\| glycerophosphoryl diester phosphodiesterase [Bacillus subtilis subsp... gi\|221317282 - gi\|221317282\|ref\|ZP_03598576.1\| glycerophosphoryl diester phosphodiesterase [Bacillus subtilis subsp...	3.0E-51	[2..253]	[38..292]
gi\|27886770, gi\|... - gi\|34763559\|ref\|ZP_00144495.1\| Glycerophosphoryl diester phosphodiesterase [Fusobacterium nucleatum ...	4.0E-51	[2..251]	[4..242]
gi\|19705196, gi\|... - gi\|19713139\|gb\|AAL93990.1\| Glycerophosphoryl diester phosphodiesterase [Fusobacterium nucleatum subs...	2.0E-49	[2..251]	[22..260]
gi\|229080695, gi... - gi\|229080695\|ref\|ZP_04213214.1\| Glycerophosphoryl diester phosphodiesterase [Bacillus cereus Rock4-2... gi\|29897153, gi\|... - gi\|30021598\|ref\|NP_833229.1\| glycerophosphoryl diester phosphodiesterase [Bacillus cereus ATCC 14579... gi\|229151681, gi... - gi\|229151681\|ref\|ZP_04279882.1\| Glycerophosphoryl diester phosphodiesterase [Bacillus cereus m1550],... gi\|228637389, gi... - gi\|229146049\|ref\|ZP_04274426.1\| Glycerophosphoryl diester phosphodiesterase [Bacillus cereus BDRD-ST... gi\|229128763, gi... - gi\|229128763\|ref\|ZP_04257740.1\| Glycerophosphoryl diester phosphodiesterase [Bacillus cereus BDRD-Ce...	2.0E-49	[3..254]	[39..314]

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Predicted Domain #1

Region A:
Residues: [1-321]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEIVGHRAF KARYPENTLL AFEKAYAAGA DVIETDLQMT SDGMVVVNHD SDTGRMWDKN  60
   61 LVIGESTWEE VKRLRCKEDG SLAMMTLKEI LTWAVCHPGA KLMLDIKFTN EKIIMIKTFV 120
  121 IMLEVKNDLK FWQERITWGL WLLDWYDFGI ETGVLKDFKV IVISLSLDIA SQFVKRSLTL 180
  181 NDPHYKLFGI SVHFVSSWTS QFRLRLLPVL MKNDIKVYLW TVNKPIDFKY LCELPIHGAI 240
  241 TDDPIKARKL CDGHTVAKKP TAEKKFVAPS LASVDGLRFH AFIKVYNILC TLLYSKWVHI 300
  301 KLCGWSIAYV IFLFLRTIHF L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	154.31133
Match:	1o1zA_
Description:	Hypothetical protein TM1621
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits