YRC Public Data Repository - Protein Structure Prediction

Protein:	TCO89
Organism:	Saccharomyces cerevisiae
Length:	799 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TCO89.

Description	E-value	Query Range	Subject Range
TCO89 - Subunit of TORC1 (Tor1p or Tor2p-Kog1p-Lst8p-Tco89p), a complex that regulates growth in response to... gi\|207340670 - gi\|207340670\|gb\|EDZ68951.1\| YPL180Wp-like protein [Saccharomyces cerevisiae AWRI1631] TCO89_YEAST - Target of rapamycin complex 1 subunit TCO89 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)...	0.0	[1..799]	[1..799]
gi\|25403219, gi\|... - pir\|\|G86471 unknown protein [imported] - Arabidopsis thaliana, gi\|15219498\|ref\|NP_174745.1\| Ulp1 pr...	2.0E-93	[1..555]	[512..1050]
gi\|124505617, gi... - gi\|23510226\|ref\|NP_702892.1\| Plasmodium falciparum trophozoite antigen r45-like protein [Plasmodium ...	3.0E-79	[13..576]	[381..925]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-65	[2..464]	[386..882]
MDN1_GIAIN - Midasin OS=Giardia intestinalis GN=MDN1 PE=3 SV=1	5.0E-57	[91..551]	[4031..4530]
GL50803_39312 - \| organism=Giardia_Assemblage_A_isolate_WB \| product=Midasin \| location=GLCHR02:40567-55074(+) \| len... ctg02_53\|39312\|M... - null gi\|157432603, gi... - gi\|71070869\|ref\|XP_768005.1\| hypothetical protein GLP_74_7403_21910 [Giardia lamblia ATCC 50803], gi...	5.0E-57	[91..551]	[4031..4530]

Back

Predicted Domain #1

Region A:
Residues: [1-568]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVHRGRTLKS DTDVTSLNAS TVSHQSKPFR QFSTRSRAKS NASFKGLRRV LTHDGTLDND  60
   61 YFNKHNVSQK CKSSDALFRK RTISGLNMTA LTRVKSNQGK RSASFHSPVH NTLLSPKNSS 120
  121 HSNTGTAGFG LKPRRSKSTQ SVLSLRDAQE SKKSESTTDE EVECFSEDNI EDGKVNNDKV 180
  181 IAEHVMPEEK KNVQQLNQNE LQSPDSIDEQ EEDKSGTDGK ENHRAVSLPL PHLSSNNYFG 240
  241 ESSHSIEHQK DGETSPSSIE TKLNATSVIN EEGQSKVTKE ADIDDLSSHS QNLRASLVKA 300
  301 GDNISEAPYD KEKKILDVGN TLAAHKSNQK PSHSDEQFDQ EDHIDAPRSN SSRKSDSSFM 360
  361 SLRRQSSKQH KLLNEEEDLI KPDDISSAGT KDIEGHSLLE NYAPNMILSQ STGVERRFEN 420
  421 SSSIQNSLGN EIHDSGEHMA SGDTFNELDD GKLRKSKKNG GRSQLGQNIP NSQSTFPTIA 480
  481 NIGSKDNNVP QHNFSTSISS LTNNLRRAAP ESFHGSRMNN IFHKKGNQNL LLRSNDLNKN 540
  541 SAAPASPLSN EHITSSTNSG SDANRQSN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [569-799]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGAKFNSFAQ FLKSDGIDAE SRTQRKLWLQ RENSIMDLSS QNDGSDSIFM AGNIDAKREF  60
   61 ERISHEYSNV KRFYNPLDEA LLRVQPIITG NANNIRKKSH NDAQSIAHSS SDTDHKDEDD 120
  121 LLFTNYDKKF DDLYPHLASA KIQAVLSGIW KSESYLFNKD VNPINKNRTT STNHSVGHTA 180
  181 SQNARNLLRG PMGSSTTLHH QRVINSLQPT TRAVNRRMEN VGYMHTQPQQ R

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits