YRC Public Data Repository - Protein Structure Prediction

Protein:	YPL168W
Organism:	Saccharomyces cerevisiae
Length:	430 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPL168W.

Description	E-value	Query Range	Subject Range
YPL168W - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th... gi\|207340655 - gi\|207340655\|gb\|EDZ68940.1\| YPL168Wp-like protein [Saccharomyces cerevisiae AWRI1631] MRX4_YEAST - MIOREX complex component 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRX4 PE=1 SV=...	0.0	[1..430]	[1..430]

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Predicted Domain #1

Region A:
Residues: [1-430]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVLYTSASL KKMKCLAFNM GMNCVRTVSH ARSGGAKFGG RNVFNIFDSK TPDSVRIKAF  60
   61 KNTIYQSAMG KGKTKFSAME INLITSLVRG YKGEGKKNAI NPLQTNVQIL NKLLLTHRLT 120
  121 DKDILEGMNL AAGPVNVAIP RDITPQEEKK KVELRNRKAE NMDLHPSRKM HIKELLHSLN 180
  181 LDMCNDEEVY QKISLYLQKN EESRTSVGAS QQNHVDIDIN SLKRYLQNIE KKARQKSAID 240
  241 KQKKNQARIY QWNTQSFSEI VPLSAGNILF KREPNRLWKR LQNGISVFLG SNGGGKKSKT 300
  301 TKKVLQGNNI LLHSLENNKD MTLSNNFDHS VFNINFTDLF GVINASGSPP DRVLNEINEI 360
  361 ELKGWKCVGN LYDNNKIVVF QSSNPLLEDT KIPQKSFTNS KRFLISLSAL LASFFAYYRY 420
  421 RLSQRQESKK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [163-430]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLHPSRKMHI KELLHSLNLD MCNDEEVYQK ISLYLQKNEE SRTSVGASQQ NHVDIDINSL  60
   61 KRYLQNIEKK ARQKSAIDKQ KKNQARIYQW NTQSFSEIVP LSAGNILFKR EPNRLWKRLQ 120
  121 NGISVFLGSN GGGKKSKTTK KVLQGNNILL HSLENNKDMT LSNNFDHSVF NINFTDLFGV 180
  181 INASGSPPDR VLNEINEIEL KGWKCVGNLY DNNKIVVFQS SNPLLEDTKI PQKSFTNSKR 240
  241 FLISLSALLA SFFAYYRYRL SQRQESKK