YRC Public Data Repository - Protein Structure Prediction

Protein:	ATG29
Organism:	Saccharomyces cerevisiae
Length:	213 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATG29.

Description	E-value	Query Range	Subject Range
ATG29 - Autophagy-specific protein that is required for recruitment of other ATG proteins to the pre-autopha... ATG29_YEAST - Autophagy-related protein 29 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATG29 PE=1 ...	9.0E-96	[1..213]	[1..213]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIMNSTNTVV YIKVKGRRPQ GFLDPPKFEW NGTKERQLWT MVSNLNYSQD QIDWQNLSKI  60
   61 FETPEFFLKK RTYKLFAEHL ELLQLQLEKK RDLEKYSNDQ VNEGMSDLIH KYTPTLQNDN 120
  121 LLNVSASPLT TERQDSEEVE TEVTNEALQH LQTSKILNIH KKTSDSENKP NDKLDKDGIN 180
  181 KEMECGSSDD DLSSSLSVSK SALEEALMDR LQF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [98-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDQVNEGMSD LIHKYTPTLQ NDNLLNVSAS PLTTERQDSE EVETEVTNEA LQHLQTSKIL  60
   61 NIHKKTSDSE NKPNDKLDKD GINKEMECGS SDDDLSSSLS VSKSALEEAL MDRLQF