YRC Public Data Repository - Protein Structure Prediction

Protein:	YPL162C
Organism:	Saccharomyces cerevisiae
Length:	273 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPL162C.

Description	E-value	Query Range	Subject Range
YPL162C - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th... YP162_YEAST - Vacuolar membrane protein YPL162C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPL162...	0.0	[1..273]	[1..273]
gi\|41054948, gi\|... - gi\|41054948\|ref\|NP_956761.1\| transmembrane protein 110 [Danio rerio], gi\|32766353\|gb\|AAH55172.1\| Tra...	3.0E-86	[4..249]	[28..246]
TMEM110 - transmembrane protein 110	2.0E-84	[3..249]	[20..242]
STIMA_RAT - Store-operated calcium entry regulator STIMATE OS=Rattus norvegicus GN=Tmem110 PE=2 SV=1	3.0E-84	[3..249]	[20..242]
gi\|12844080 - gi\|12844080\|dbj\|BAB26228.1\| unnamed protein product [Mus musculus]	4.0E-84	[3..249]	[20..242]
gi\|32419088, gi\|... - gi\|32419088\|ref\|XP_330022.1\| hypothetical protein ( hypothetical protein B14D6.530 [imported] - Neur... gi\|85111830 - gi\|85111830\|ref\|XP_964124.1\| hypothetical protein	2.0E-76	[10..237]	[191..447]
gi\|33417172, gi\|... - gi\|33417172\|gb\|AAH56122.1\| MGC69149 protein [Xenopus laevis], gi\|147899666\|ref\|NP_001079896.1\| hypot...	1.0E-66	[5..231]	[10..211]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYVSNGKDTC QLLGPVSLFV QTLMGMTAVI VLLVKRNYEH PRRKMIVWSY DIGKQIIGSL  60
   61 GIHFLNLGIS ILKKRRRSLF AITAKGND

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [89-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEDQCDWYFL NLLLDTTVGI PILWLCLYII EKVLKSLHFQ NIESGNYFPS KTVGSHPRKP  60
   61 LFSAFVKQLL IFIVGLGVMK FCVFLILNYL EDLAYWFADL ILGWSDSWPN FQVFLVMFVF 120
  121 PILLNCFQYF CVDNVIRLHS ESLTITNAEN FETNTFLNDE IPDLSEVSNE VPNKDNNISS 180
  181 YGSII

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits