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View Structure Prediction Details

Protein: YPL142C
Organism: Saccharomyces cerevisiae
Length: 105 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPL142C.

Description E-value Query
Range
Subject
Range
gi|49642525, gi|... - gi|50306831|ref|XP_453391.1| unnamed protein product [Kluyveromyces lactis], gi|49642525|emb|CAH0048...
132.0 [0..9] [104..38]

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Predicted Domain #1
Region A:
Residues: [1-105]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNRVLIQST NLDVGWVQED SNRSTEGLGW QIVSEGGSND TRVTVSSGNL TPHNSNLRTP  60
   61 DFLGGSVDVG NTLTQVKLSI LWSSDTFDLD QRDIWVVDSL GSLVG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.378 d.189.1 PX domain
View Download 0.368 b.40.4 Nucleic acid-binding proteins
View Download 0.349 d.16.1 FAD-linked reductases, C-terminal domain
View Download 0.318 d.20.1 UBC-like
View Download 0.305 d.87.2 CO dehydrogenase flavoprotein C-terminal domain-like
View Download 0.290 b.40.4 Nucleic acid-binding proteins
View Download 0.287 b.1.2 Fibronectin type III
View Download 0.277 b.40.4 Nucleic acid-binding proteins
View Download 0.269 d.54.1 Enolase N-terminal domain-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle