| Protein: | SPP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 353 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPP1.
| Description | E-value | Query Range |
Subject Range |
|
|
167.0 | [0..22] | [205..5] |
|
|
165.0 | [0..23] | [248..1932] |
|
|
165.0 | [0..22] | [205..5] |
|
Region A: Residues: [1-109] |
1 11 21 31 41 51
| | | | | |
1 MSLPQWCPPH STLKRNPTTG EDVYCICKRP DYGELMVGCD GCDDWFHFTC LHIPEQFKDL 60
61 VFSFYCPYCQ AGITGKNKDA IINGEGSLPK TLWKRKCRIS DCYKPCLQD
|
| Detection Method: |  |
| Confidence: | 3.0 |
| Match: | 1fp0A |
| Description: | Nuclear corepressor KAP-1 (TIF-1beta) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [110-301] |
1 11 21 31 41 51
| | | | | |
1 SKYCSEEHGR EFVNDIWSRL KTDEDRAVVK KMVEQTGHID KFKKFGQLDF IDNNIVVKTD 60
61 DEKEIFDQIV VRDMTLKTLE DDLQEVQEIS LPLFKKKLEL LEVYLGWLDN VYTEMRKLDD 120
121 DAASHVECGK EDSKGTKRKK KKNSSRSRAR KNICGYCSTY ERIPCSVEEF VRDFGSNEEA 180
181 TKIHEVCTKW KC
|
| Detection Method: | |
| Confidence: | 16.221849 |
| Match: | 1e6iA |
| Description: | GCN5 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [302-353] |
1 11 21 31 41 51
| | | | | |
1 NRHLDWVSTN QEQYLQQIDS LESMQERLQH LIQARKKQLN IQYYEEILRR GL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.739 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.739 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.715 | a.4.1 | Homeodomain-like |
| View | Download | 0.693 | a.4.1 | Homeodomain-like |
| View | Download | 0.681 | a.4.1 | Homeodomain-like |
| View | Download | 0.681 | a.4.1 | Homeodomain-like |
| View | Download | 0.636 | a.4.1 | Homeodomain-like |
| View | Download | 0.588 | a.4.1 | Homeodomain-like |
| View | Download | 0.574 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.563 | a.60.1 | SAM/Pointed domain |
