YRC Public Data Repository - Protein Structure Prediction

Protein:	ODC1
Organism:	Saccharomyces cerevisiae
Length:	310 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ODC1.

Description	E-value	Query Range	Subject Range
gi\|194044922 - gi\|194044922\|ref\|XP_001927475.1\| PREDICTED: similar to adenine nucleotide translocator 2 [Sus scrofa... gi\|186886456, gi... - gi\|187936981\|ref\|NP_001120751.1\| solute carrier family 25 (mitochondrial carrier; adenine nucleotide... ADT2_BOVIN - ADP/ATP translocase 2 OS=Bos taurus GN=SLC25A5 PE=2 SV=3	4.0E-99	[4..300]	[1..297]
ADT2_MOUSE - ADP/ATP translocase 2 OS=Mus musculus GN=Slc25a5 PE=1 SV=3	1.0E-98	[4..300]	[1..297]
gi\|2772564, gi\|1... - gi\|2772564\|gb\|AAB96347.1\| ADP/ATP carrier protein (adenine nucleotide translocator 2) [Homo sapiens]...	2.0E-98	[4..300]	[1..297]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-97	[4..300]	[1..297]
gi\|4115752 - gi\|4115752\|dbj\|BAA36507.1\| ADP/ATP translocase [Rana rugosa]	2.0E-97	[4..300]	[1..297]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSIDNRPLP FIYQFTAGAI AGVSELLVMY PLDVVKTRMQ LQVTTKGHPA VVAAKAAVDH  60
   61 YTGVMDCLTK IVKKEGFSHL YKGITSPILM EAPKRAIKFS GNDTFQTFYK KIFPTPN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	32.638272
Match:	PF00153
Description:	Mitochondrial carrier protein

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [118-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEMTQKIAIY SGASAGAVEA FVVAPFELVK IRLQDVNSQF KTPIEVVKNS VVKGGVLSLF  60
   61 NGLEATIWRH VLWNAGYFGI IFQIRKLLPA AKTST

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	18.638272
Match:	PF00153
Description:	Mitochondrial carrier protein

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [213-310]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKTRNDLIAG AIGGTVGCLL NTPFDVVKSR IQRSSGPLRK YNWSLPSVLL VYREEGFKAL  60
   61 YKGFAPKVMR LAPGGGLLLV VFTNVMDFFR EVKYGKKQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	21.79588
Match:	PF00153
Description:	Mitochondrial carrier protein

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits