YRC Public Data Repository - Protein Structure Prediction

Protein:	TAF14
Organism:	Saccharomyces cerevisiae
Length:	244 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TAF14.

Description	E-value	Query Range	Subject Range
gi\|1256510 - gi\|1256510\|emb\|CAA49192.1\| unnamed protein product [Saccharomyces cerevisiae]	334.0	[0..10]	[244..1]
gi\|50294109, gi\|... - gi\|50294109\|ref\|XP_449466.1\| hypothetical protein CAGL0M02739g [Candida glabrata CBS138], gi\|4952878... gi\|49528780 - gi\|49528780\|emb\|CAG62442.1\| unnamed protein product [Candida glabrata]	303.0	[0..1]	[244..1]
gi\|44981540 - gi\|44981540\|gb\|AAS51325.1\| ACR099Cp [Ashbya gossypii ATCC 10895] gi\|44981540, gi\|... - gi\|45185785\|ref\|NP_983501.1\| ACR099Cp [Ashbya gossypii ATCC 10895], gi\|44981540\|gb\|AAS51325.1\| ACR09...	302.0	[0..1]	[244..1]
gi\|85081360 - gi\|85081360\|ref\|XP_956708.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28917782, gi\|... - gi\|32403834\|ref\|XP_322530.1\| hypothetical protein [Neurospora crassa], gi\|28917782\|gb\|EAA27472.1\| hy...	290.0	[0..12]	[241..94]
gi\|40882136 - gi\|40882136\|emb\|CAF05963.1\| related to transcription initiation factor IIF 30K chain [Neurospora cra...	290.0	[0..5]	[241..3]
gi\|49642499\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140] gi\|50306779, gi\|... - gi\|50306779\|ref\|XP_453365.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642499\|emb\|CAH0046...	289.0	[0..1]	[244..1]
TAF14_SCHPO - Transcription initiation factor TFIID subunit 14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... tfg3 - transcription factor TFIIF complex subunit Tfg3	282.0	[0..2]	[241..1]
gi\|116207650, gi... - gi\|88183715\|gb\|EAQ91183.1\| hypothetical protein CHGG_03118 [Chaetomium globosum CBS 148.51], gi\|1162...	242.0	[0..5]	[241..64]
gi\|67515603, gi\|... - gi\|67515603\|ref\|XP_657687.1\| hypothetical protein AN0083.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	239.0	[0..2]	[238..1]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVATVKRTIR IKTQQHILPE VPPVENFPVR QWSIEIVLLD DEGKEIPATI FDKVIYHLHP  60
   61 TFANPNRTFT DPPFRIEEQG WGGFPLDISV FLLEKAGERK IPHDLNFLQE SYEVEHVIQI 120
  121 PLNKPLLTEE LAKSGSTEET TANTGTIGKR RTTT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	57.60206
Match:	PF03366
Description:	YEATS family

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [155-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTTAEPKAKR AKTGSASTVK GSVDLEKLAF GLTKLNEDDL VGVVQMVTDN KTPEMNVTNN  60
   61 VEEGEFIIDL YSLPEGLLKS LWDYVKKNTE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits