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View Structure Prediction Details

Protein: YPL114W
Organism: Saccharomyces cerevisiae
Length: 139 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPL114W.

Description E-value Query
Range
Subject
Range
gi|51014047 - gi|51014047|gb|AAT93317.1| YPL114W [Saccharomyces cerevisiae]
209.0 [0..1] [139..1]

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Predicted Domain #1
Region A:
Residues: [1-139]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQLSTYLPS PPSTNMSCTF SSVMSVCFMT MSATVLPICG KAVTSHLRSN SCLTRVSSFL  60
   61 NTSRPQLATF PDSRASSSTS SSMHVPLPTL TILTPSLHQA KLLRLIILFV EAVLGKAKMI 120
  121 KSAFFQVFGS SRSEWYLAL

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Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.775 a.149.1 RNase III endonuclease catalytic domain
View Download 0.717 a.24.9 alpha-catenin/vinculin
View Download 0.652 a.24.17 Group V grass pollen allergen
View Download 0.652 a.24.17 Group V grass pollen allergen
View Download 0.643 a.25.1 Ferritin-like
View Download 0.614 a.7.1 Spectrin repeat
View Download 0.614 a.7.1 Spectrin repeat
View Download 0.597 f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore
View Download 0.576 a.26.1 4-helical cytokines
View Download 0.540 a.24.3 Cytochromes


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle