YRC Public Data Repository - Protein Structure Prediction

Protein:	YPL107W
Organism:	Saccharomyces cerevisiae
Length:	248 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPL107W.

Description	E-value	Query Range	Subject Range
gi\|49526364, gi\|... - gi\|50289249\|ref\|XP_447055.1\| unnamed protein product [Candida glabrata], gi\|49526364\|emb\|CAG59988.1\|... gi\|49526364 - gi\|49526364\|emb\|CAG59988.1\| unnamed protein product [Candida glabrata]	217.0	[0..16]	[240..15]
gi\|45201310, gi\|... - gi\|45201310\|ref\|NP_986880.1\| AGR214Cp [Ashbya gossypii ATCC 10895], gi\|44986164\|gb\|AAS54704.1\| AGR21... gi\|44986164 - gi\|44986164\|gb\|AAS54704.1\| AGR214Cp [Ashbya gossypii ATCC 10895]	189.0	[0..15]	[230..73]
gi\|49644196 - gi\|49644196\|emb\|CAH00148.1\| KLLA0E24619p [Kluyveromyces lactis] gi\|49644196, gi\|... - gi\|50310095\|ref\|XP_455061.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644196\|emb\|CAH0014...	184.0	[0..10]	[224..1]
gi\|21592698, gi\|... - gi\|21592698\|gb\|AAM64647.1\| unknown [Arabidopsis thaliana], gi\|20147183\|gb\|AAM10308.1\| AT5g17280/MKP1...	134.0	[0..10]	[117..31]
orf19.12069, orf... - orf19.4600 CGDID:CAL0003579 Assembly 19, Contig19-10212 (75114, 75821) CDS, translated using codon t... gi\|238881646 - gi\|238881646\|gb\|EEQ45284.1\| conserved hypothetical protein [Candida albicans WO-1] gi\|68466380, gi\|... - gi\|68466380\|ref\|XP_722672.1\| hypothetical protein CaO19.4600 [Candida albicans SC5314], gi\|68466085\|...	123.0	[0..10]	[147..59]
gi\|49652766, gi\|... - gi\|50412052\|ref\|XP_457101.1\| hypothetical protein DEHA0B03135g [Debaryomyces hansenii CBS767], gi\|49...	122.0	[0..8]	[157..47]
gi\|109476948 - gi\|109476948\|ref\|XP_001065840.1\| PREDICTED: similar to CG5946-PB, isoform B [Rattus norvegicus]	116.0	[0..27]	[130..1]
YJH2_SCHPO - UPF0651 protein P31B10.02, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=S... SPCP31B10.02 - conserved eukaryotic protein	115.0	[0..53]	[154..30]
gi\|13435789 - gi\|13435789\|gb\|AAH04750.1\| Cyb5rl protein [Mus musculus]	105.0	[0..72]	[130..18]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRNQGWSLL YRIYPVRRFT RYSRVDMTFE GNTQDISTSV EERMTTVFGG RLKGEPPRST  60
   61 SRVLSGGTKK IAGVQVPAKP QEPDNCCMSG CVNCVWEIYS EDLRDWKHRR KEAAEKIAGT 120
  121 KEKWPKDWNP PLGLLHMENV PVELREKKLE TDSKKAEQPH DLSAIRSLFP KRKGPLPKSV 180
  181 LAAKRKNIAL RH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.282	N/A	N/A	c.51.1	Anticodon-binding domain of Class II aaRS
View	Download	0.271	N/A	N/A	d.110.4	SNARE-like
View	Download	0.208	N/A	N/A	c.51.1	Anticodon-binding domain of Class II aaRS
View	Download	0.208	N/A	N/A	c.51.1	Anticodon-binding domain of Class II aaRS

Predicted Domain #2

Region A:
Residues: [193-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NYEQKDGGDQ SVSESDADEG WEDIPVYVKA FAEFESKKRL QKIRRQEEIK KRTALV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.626	a.7.17	Description not found.
View	Download	0.588	a.10.2	Description not found.
View	Download	0.577	a.48.4	Description not found.
View	Download	0.532	a.8.1	Bacterial immunoglobulin/albumin-binding domains
View	Download	0.509	a.272.1	Description not found.
View	Download	0.498	a.272.1	Description not found.
View	Download	0.404	a.2.3	Chaperone J-domain
View	Download	0.369	a.2.3	Chaperone J-domain
View	Download	0.337	a.60.1	SAM/Pointed domain
View	Download	0.302	a.23.5	Hemolysin expression modulating protein HHA

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits