| Protein: | SYH1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 849 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYH1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..849] | [1..849] |
|
|
5.0E-64 | [3..841] | [16..882] |
|
|
7.0E-48 | [1..426] | [1..412] |
|
|
6.0E-45 | [35..748] | [412..1135] |
|
|
4.0E-37 | [183..741] | [186..731] |
|
|
4.0E-36 | [31..756] | [237..968] |
|
|
7.0E-36 | [10..679] | [435..1084] |
|
|
9.0E-36 | [152..739] | [835..1422] |
|
|
1.0E-35 | [152..739] | [834..1421] |
|
Region A: Residues: [1-143] |
1 11 21 31 41 51
| | | | | |
1 MNPINSLAFD LHSVKLADAN SDTAALSNSN TPTMNNAALL QRPSSIMDSI GVQRVPSPFV 60
61 PGSNAISGAS TVPFNAYDAE ITGSPLQISA NQENNSAFSA ASSNLHMNAS SPSVLNKPSS 120
121 TFPNVAPYLY NATGPAPNVG NQP
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.256 | d.2.1 | Lysozyme-like |
| View | Download | 0.249 | c.59.1 | MurD-like peptide ligases, peptide-binding domain |
| View | Download | 0.236 | d.92.1 | Metalloproteases ("zincins"), catalytic domain |
| View | Download | 0.256 | d.2.1 | Lysozyme-like |
| View | Download | 0.249 | c.59.1 | MurD-like peptide ligases, peptide-binding domain |
| View | Download | 0.236 | d.92.1 | Metalloproteases ("zincins"), catalytic domain |
|
Region A: Residues: [144-230] |
1 11 21 31 41 51
| | | | | |
1 PPPGIESQWK YIDSNGNIQG PFGTNNMSQW YQGGYFTPTL QICRLATSPE PFGVNDRFIR 60
61 LGELTTLVNN YQDPFVAFDF IVIRALN
|
| Detection Method: | |
| Confidence: | 26.920819 |
| Match: | PF02213 |
| Description: | GYF domain |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 1.620582218767 | bayes_pls_golite062009 |
| protein binding | 0.648944095180566 | bayes_pls_golite062009 |
|
Region A: Residues: [231-590] |
1 11 21 31 41 51
| | | | | |
1 AVPLVAPTSS EKQKVESRDL IPVADVHSDD FTYEEILGLK FEDGSYYHET QVWVPVDGRH 60
61 ITKVDRIPKI SAYTAPLSTT SSRSNKTTSS HEEKVPSHEE ASPEEQEVFS EEGRTVSNIT 120
121 NEEESIVKNP TKQEEESRGS EKEQNILDQV QPEIEEVDRK DVISTADEPK SKDTPQMTSE 180
181 EQKRFAKAEL MAQKLLEEQQ RQEEEKKRRE EQRKLKKEKK LKQKQKKEEE KLKKKKKEEG 240
241 KLEKEKQKEL LNNILTGDTE TPSSENTATS ITTNLAPWAN KKPEGAVYNQ ISSALEDLKK 300
301 ENSSKKEKKP NRTQLDREQA LKLQKEILSS AQIPKTQTGS AWGIKPQQPI KVDIKGELMK 360
361
|
| Detection Method: | |
| Confidence: | 45.457575 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [591-849] |
1 11 21 31 41 51
| | | | | |
1 DSTKINSQSK INKANNGDIK PDSTFIEEQK KLWEQVQKKT KKFNRASSLD DFISRTPSPS 60
61 SSALNSSNTS NAWTTVSSKS TTHIASTMPV AGNQSKSYIS LDTLRSSGGL STATKTKMSD 120
121 KSKQIGSSTS IPTLKARQVK PSRIPAYPGN ASVSKRQEFL RWCRSQLKLN TGVQPDNVLE 180
181 MLLSLPPGSE SKEIIADTIY SYSSTMDGRR FATDFIKKRL ECEEEINDPL SWSEVLAMPE 240
241 GSSEDWEFQV VGKKKGKRF
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
