YRC Public Data Repository - Protein Structure Prediction

Protein:	FMP30
Organism:	Saccharomyces cerevisiae
Length:	468 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FMP30.

Description	E-value	Query Range	Subject Range
FMP30 - Protein of unknown function proposed to be involved in N-acylethanolamine metabolism; related to hum... gi\|207340582 - gi\|207340582\|gb\|EDZ68889.1\| YPL103Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190407853 - gi\|190407853\|gb\|EDV11118.1\| hypothetical protein SCRG_02392 [Saccharomyces cerevisiae RM11-1a] FMP30_YEAST - N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D, mitochondrial OS=Saccharomyces cerevisi...	0.0	[1..468]	[1..468]
gi\|26334279 - gi\|26334279\|dbj\|BAC30857.1\| unnamed protein product [Mus musculus]	5.0E-62	[114..468]	[62..386]
gi\|21241024, gi\|... - gi\|21241024\|ref\|NP_640606.1\| hypothetical protein XAC0250 [Xanthomonas axonopodis pv. citri str. 306...	2.0E-58	[126..468]	[6..326]
gi\|17431596 - gi\|17431596\|emb\|CAD18273.1\| putative zn-dependent hydrolase of the beta-lactamase fold protein [Rals... gi\|17549343 - gi\|17549343\|ref\|NP_522683.1\| hypothetical protein RS05497 [Ralstonia solanacearum GMI1000]	9.0E-57	[142..466]	[26..329]
gi\|14024397, gi\|... - gi\|14024397\|dbj\|BAB51001.1\| mlr4314 [Mesorhizobium loti MAFF303099], gi\|13473647\|ref\|NP_105215.1\| hy...	2.0E-56	[123..466]	[14..343]
gi\|66766587, gi\|... - gi\|66766587\|ref\|YP_241349.1\| hypothetical protein XC_0242 [Xanthomonas campestris pv. campestris str... gi\|21229710, gi\|... - gi\|21229710\|ref\|NP_635627.1\| hypothetical protein XCC0232 [Xanthomonas campestris pv. campestris str...	2.0E-56	[126..467]	[5..324]
gi\|9107142, gi\|1... - gi\|9107142\|gb\|AAF84826.1\|AE004021_3 conserved hypothetical protein [Xylella fastidiosa 9a5c], gi\|158... gi\|11360814 - pir\|\|B82607 conserved hypothetical protein XF2024 [imported] - Xylella fastidiosa (strain 9a5c)	3.0E-56	[130..464]	[5..324]
gi\|254743538 - gi\|254743538\|ref\|ZP_05201223.1\| hypothetical protein BantKB_21462 [Bacillus anthracis str. Kruger B] gi\|254737275 - gi\|254737275\|ref\|ZP_05194979.1\| hypothetical protein BantWNA_19154 [Bacillus anthracis str. Western ... gi\|254722237 - gi\|254722237\|ref\|ZP_05184025.1\| hypothetical protein BantA1_07199 [Bacillus anthracis str. A1055] gi\|254684829 - gi\|254684829\|ref\|ZP_05148689.1\| hypothetical protein BantC_13370 [Bacillus anthracis str. CNEVA-9066... gi\|30256892, gi\|... - gi\|30262261\|ref\|NP_844638.1\| hypothetical protein BA2247 [Bacillus anthracis str. Ames], gi\|30256892... gi\|254759106 - gi\|254759106\|ref\|ZP_05211133.1\| hypothetical protein BantA9_12446 [Bacillus anthracis str. Australia... gi\|254751591 - gi\|254751591\|ref\|ZP_05203628.1\| hypothetical protein BantV_03951 [Bacillus anthracis str. Vollum] gi\|190565413, gi... - gi\|190565413\|ref\|ZP_03018333.1\| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I], ... gi\|195993516, gi... - gi\|196033836\|ref\|ZP_03101247.1\| conserved hypothetical protein [Bacillus cereus W], gi\|195993516\|gb\|... gi\|170706614, gi... - gi\|170706614\|ref\|ZP_02897073.1\| conserved hypothetical protein [Bacillus anthracis str. A0389], gi\|1... gi\|172084352, gi... - gi\|177649278\|ref\|ZP_02932280.1\| conserved hypothetical protein [Bacillus anthracis str. A0174], gi\|1... gi\|167509974, gi... - gi\|167642071\|ref\|ZP_02400296.1\| conserved hypothetical protein [Bacillus anthracis str. A0193], gi\|1... gi\|49329129, gi\|... - gi\|49477573\|ref\|YP_036361.1\| hypothetical protein BT9727_2032 [Bacillus thuringiensis serovar konkuk... gi\|170669061, gi... - gi\|170687010\|ref\|ZP_02878229.1\| conserved hypothetical protein [Bacillus anthracis str. A0465], gi\|1... gi\|49185103, gi\|... - gi\|49185103\|ref\|YP_028355.1\| hypothetical protein BAS2092 [Bacillus anthracis str. Sterne], gi\|49179... gi\|164713672, gi... - gi\|165870517\|ref\|ZP_02215171.1\| conserved hypothetical protein [Bacillus anthracis str. A0488], gi\|1... gi\|47527545, gi\|... - gi\|47527545\|ref\|YP_018894.1\| hypothetical protein GBAA2247 [Bacillus anthracis str. 'Ames Ancestor']... gi\|167632718, gi... - gi\|167632718\|ref\|ZP_02391044.1\| conserved hypothetical protein [Bacillus anthracis str. A0442], gi\|1... gi\|229268043, gi... - gi\|229603635\|ref\|YP_002866601.1\| hypothetical protein BAA_2310 [Bacillus anthracis str. A0248], gi\|2... gi\|229121802, gi... - gi\|229121802\|ref\|ZP_04251022.1\| Outer membrane protein romA [Bacillus cereus 95/8201], gi\|228661591\|... gi\|228813742, gi... - gi\|228945868\|ref\|ZP_04108211.1\| Outer membrane protein romA [Bacillus thuringiensis serovar monterre... gi\|227814937, gi... - gi\|227814937\|ref\|YP_002814946.1\| hypothetical protein BAMEG_2348 [Bacillus anthracis str. CDC 684], ...	4.0E-56	[155..468]	[5..307]
gi\|28198696, gi\|... - gi\|28198696\|ref\|NP_779010.1\| hypothetical protein PD0791 [Xylella fastidiosa Temecula1], gi\|28056787... gi\|182631496, gi... - gi\|182681386\|ref\|YP_001829546.1\| putative Zn-dependent hydrolase [Xylella fastidiosa M23], gi\|182631...	1.0E-55	[130..463]	[5..323]
gi\|25521108 - pir\|\|G97682 hypothetical protein AGR_C_4888 [imported] - Agrobacterium tumefaciens (strain C58, Cere... gi\|15157909, gi\|... - gi\|15889950\|ref\|NP_355631.1\| hypothetical protein AGR_C_4888 [Agrobacterium tumefaciens str. C58], g...	2.0E-55	[123..466]	[46..374]

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Predicted Domain #1

Region A:
Residues: [1-174]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFVTCHVQM RLLLQRRLVR LRESELFRPQ TSLSTFKRHA SQKTRPIQKC SRKYARILLL  60
   61 SVLVPYTGYA FYVSLATVKQ IDLRNEMCQR LEENNNEVTY KGSLLKYSPL EVLGRFENPF 120
  121 EEYRIQTVFE FFANRVFELF ERNRGGIPRD VHQMNKLMPV HKPTWGPNLV DVDP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [175-338]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AEETALPLEC KVLDELHIPT AVEENEGSKC PVYNTWLGQS CNYTVYNGLR ILTDPLFSDF  60
   61 LIHKTLGPKR ITQMPSQITE VPKPDIILVS HNHPDHLDLE SLEYWSGKDS PLWIVPKGMK 120
  121 SYMTSNGCDN VLELSWWETL QVKKNNEIYH ISATPAMHWS GRSL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.39794
Match:	1smlA_
Description:	Zn metallo-beta-lactamase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.941400907161877	bayes_pls_golite062009
thiolester hydrolase activity	0.155608764594826	bayes_pls_golite062009

Predicted Domain #3

Region A:
Residues: [339-468]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDTNKSLWCS FLLTHHGNPI LFHAGDTGYV KDLFVRIKER FGKGCKLALL PCGQYCPEWH  60
   61 QKPRHINPQE VLKIMKDLEA RNVLGVHWGT FVLSGEYFLE PKEKLEMLAE WGGFKDRCYC 120
  121 PELGKTECFD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.39794
Match:	1smlA_
Description:	Zn metallo-beta-lactamase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: