YRC Public Data Repository - Protein Structure Prediction

Protein:	SEC62
Organism:	Saccharomyces cerevisiae
Length:	283 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SEC62.

Description	E-value	Query Range	Subject Range
SC62_YARLI, SEC6... - Translocation protein SEC62 OS=Yarrowia lipolytica GN=SEC62 PE=3 SV=2, (Q99161) Translocation protei... SEC62_YARLI - Translocation protein SEC62 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SEC62 PE=3 SV=2	2.0E-85	[15..282]	[13..289]
SEC62_SCHPO - Translocation protein sec62 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec62 PE=3 SV=... sec62 - ER protein translocation subcomplex subunit Sec62	2.0E-68	[34..280]	[24..251]
gi\|28924204, gi\|... - gi\|32411415\|ref\|XP_326188.1\| hypothetical protein [Neurospora crassa], gi\|28924204\|gb\|EAA33359.1\| co... gi\|85108529 - gi\|85108529\|ref\|XP_962595.1\| hypothetical protein NCU06333 [Neurospora crassa OR74A]	5.0E-66	[26..268]	[114..355]
gi\|33086592, gi\|... - gi\|77735350\|ref\|NP_001029301.1\| SEC62 homolog [Rattus norvegicus], gi\|33086592\|gb\|AAP92608.1\| Ab2-29...	2.0E-62	[51..281]	[294..526]
gi\|23274124 - gi\|23274124\|gb\|AAH23720.1\| Sec62 protein [Mus musculus]	6.0E-59	[76..281]	[1..214]
gi\|114590307 - gi\|114590307\|ref\|XP_001162878.1\| PREDICTED: similar to translocation protein-1 isoform 2 [Pan troglo... SEC62 - SEC62 homolog (S. cerevisiae)	6.0E-58	[51..281]	[87..319]
gi\|15810583, gi\|... - gi\|9293998\|dbj\|BAB01901.1\| unnamed protein product [Arabidopsis thaliana], gi\|21280985\|gb\|AAM45115.1...	1.0E-52	[32..268]	[46..257]
gi\|23489757 - gi\|23489757\|gb\|EAA21690.1\| unknown protein [Plasmodium yoelii yoelii] gi\|83286353 - gi\|83286353\|ref\|XP_730125.1\| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]	8.0E-51	[40..250]	[12..218]
gi\|23497431, gi\|... - gi\|23509583\|ref\|NP_702250.1\| translocation protein sec62, putative [Plasmodium falciparum 3D7], gi\|2...	3.0E-50	[40..250]	[12..218]

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Predicted Domain #1

Region A:
Residues: [1-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAEQTQENM SAVGPGSNAG ASVNGGSATA IATLLRNHKE LKQRQGLFQA KQTDFFRYKR  60
   61 FVRALHSEEY ANKSARQPEI YPTIPSNKIE DQLKSREIFI QLIKAQMVIP VKKLHSQECK 120
  121 EHGLKPSKDF PHLIVSNKAQ LEADEYFVWN YNPRTYMDYL IVIGVVSIIL ALVCYPLWPR 180
  181 SMRRGSYYVS LGAFGILAGF FAVAILRLIL YVLSLIVYKD VGGFWIFPNL FEDCGVLESF 240
  241 KPLYGFGEKD TYSYKKKLKR MKKKQAKRES NKKKAINEKA EQN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	139.721246
Match:	PF03839
Description:	Translocation protein Sec62

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits