YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL21B
Organism:	Saccharomyces cerevisiae
Length:	160 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL21B.

Description	E-value	Query Range	Subject Range
RL21_RAT - 60S ribosomal protein L21 OS=Rattus norvegicus GN=Rpl21 PE=1 SV=3 gi\|57686 - gi\|57686\|emb\|CAA33286.1\| rpL21 protein [Rattus rattus]	2.0E-71	[1..159]	[1..159]
gi\|57104908, gi\|... - gi\|73993380\|ref\|XP_859688.1\| PREDICTED: similar to ribosomal protein L21 isoform 7 [Canis familiaris... RPL21 - ribosomal protein L21 gi\|109123325, gi... - gi\|109123327\|ref\|XP_001099422.1\| PREDICTED: similar to 60S ribosomal protein L21 isoform 3 [Macaca m... gi\|149712387, gi... - gi\|149730048\|ref\|XP_001491540.1\| PREDICTED: similar to 60S ribosomal protein L21 isoform 1 [Equus ca... gi\|114649174, gi... - gi\|55639609\|ref\|XP_509597.1\| PREDICTED: similar to ribosomal protein L21 isoform 8 [Pan troglodytes]... tr\|M3WZ28\|M3WZ28... - Uncharacterized protein OS=Felis catus GN=LOC101092708 PE=4 SV=1 ENSCJAT00000037963 - null ENSOCUP000000211... - pep:novel scaffold:oryCun2:GL018805:674395:674877:-1 gene:ENSOCUG00000026556 transcript:ENSOCUT00000...	3.0E-71	[1..159]	[1..159]
gi\|76631561, gi\|... - gi\|76631568\|ref\|XP_877163.1\| PREDICTED: similar to ribosomal protein L21 isoform 6 [Bos taurus], gi\|... RL21_CAPHI - 60S ribosomal protein L21 OS=Capra hircus GN=RPL21 PE=2 SV=1	4.0E-71	[1..159]	[1..159]
gi\|187609316 - gi\|187609316\|pdb\|2ZKR\|QQ Chain q, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Compl... RL21_MOUSE - 60S ribosomal protein L21 OS=Mus musculus GN=Rpl21 PE=1 SV=3	8.0E-71	[1..159]	[1..159]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKSHGYRSR TRYMFQRDFR KHGAVHMSTY LKIYKVGDIV DIKANGSIQK GMPHKFYQGK  60
   61 TGVVYNVTKS SVGVIINKMV GNRYLEKRLN LRVEHIKHSK CRQEFLERVK ANAAKRAEAK 120
  121 AQGVAVQLKR QPAQPRESRI VSTEGNVPQT LAPVPYETFI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.154902
Match:	1ffkN_
Description:	Ribosomal proteins L21e
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits