YRC Public Data Repository - Protein Structure Prediction

Protein:	YPL067C
Organism:	Saccharomyces cerevisiae
Length:	198 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPL067C.

Description	E-value	Query Range	Subject Range
YP067_YEAST - Uncharacterized protein YPL067C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPL067C ... YPL067C - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th...	3.0E-88	[1..198]	[1..198]
gi\|32403376, gi\|... - gi\|32403376\|ref\|XP_322301.1\| hypothetical protein [Neurospora crassa], gi\|28917670\|gb\|EAA27364.1\| co... gi\|85080757 - gi\|85080757\|ref\|XP_956600.1\| hypothetical protein NCU00215 [Neurospora crassa OR74A]	1.0E-70	[5..170]	[127..296]
gi\|7461499, gi\|9... - gi\|9631918\|ref\|NP_048707.1\| hypothetical protein PBCV1_a350R [Paramecium bursaria Chlorella virus 1]...	5.0E-37	[17..170]	[2..120]

Back

Predicted Domain #1

Region A:
Residues: [1-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQDIVNDHQ EEAQGWKWEQ IKEIIESGEL ARLKRSRQMT DKYHEHKKRT AGLDMNQYVL  60
   61 QKLGWSLDEP QLENAAAKAF SSSTLYAVRA NDFPYNFEPG VVHLVLWSKV ALPVHSPDKA 120
  121 VREAARARMN AFLQAQPLLR PLLSSGHVAW FVNYPELQSV ARIFHAHVLL FFPRERYSAE 180
  181 QVKTTVDDIL SHGFEPLA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits