| Protein: | TIM50 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 476 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIM50.
| Description | E-value | Query Range |
Subject Range |
|
|
381.0 | [0..44] | [426..31] |
|
|
379.0 | [0..1] | [471..1] |
|
|
374.0 | [0..79] | [394..33] |
|
|
371.0 | [0..80] | [394..137] |
|
|
369.0 | [0..80] | [394..137] |
|
|
368.0 | [0..79] | [394..33] |
|
Region A: Residues: [1-156] |
1 11 21 31 41 51
| | | | | |
1 MLSILRNSVR LNSRALRVVP SAANTLTSVQ ASRRLLTSYS SFLQKETKDD KPKSILTDDM 60
61 LFKAGVDVDE KGQGKNEETS GEGGEDKNEP SSKSEKSRRK RQTSTDIKRE KYANWFYIFS 120
121 LSALTGTAIY MARDWEPQES EELKKDIDNG YTLSLM
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.374 | N/A | N/A | f.1.5 | Exotoxin A, middle domain |
| View | Download | 0.287 | N/A | N/A | c.52.1 | Restriction endonuclease-like |
| View | Download | 0.230 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.219 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.215 | N/A | N/A | b.91.1 | E2 regulatory, transactivation domain |
|
Region A: Residues: [157-348] |
1 11 21 31 41 51
| | | | | |
1 YKRFKARFNS MFTYFQEPPF PDLLPPPPPP PYQRPLTLVI TLEDFLVHSE WSQKHGWRTA 60
61 KRPGADYFLG YLSQYYEIVL FSSNYMMYSD KIAEKLDPIH AFVSYNLFKE HCVYKDGVHI 120
121 KDLSKLNRDL SKVIIIDTDP NSYKLQPENA IPMEPWNGEA DDKLVRLIPF LEYLATQQTK 180
181 DVRPILNSFE DK
|
| Detection Method: | |
| Confidence: | 56.221849 |
| Match: | 2hhlA |
| Description: | No description for 2hhlA was found. |
|
Region A: Residues: [349-476] |
1 11 21 31 41 51
| | | | | |
1 KNLAEEFDHR VKKLKDKFYG DHKSGGNWAM TALGLGNSLG GSTKFPLDLI HEEGQKNYLM 60
61 FMKMIEEEKE KIRIQQEQMG GQTFTLKDYV EGNLPSPEEQ MKIQLEKQKE VDALFEEEKK 120
121 KKKIAESK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.460 | a.47.2 | t-snare proteins |
| View | Download | 0.263 | a.59.1 | PAH2 domain |
| View | Download | 0.258 | a.118.1 | ARM repeat |
| View | Download | 0.257 | a.165.1 | Myosin phosphatase inhibitor 17kDa protein, CPI-17 |
| View | Download | 0.247 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
