YRC Public Data Repository - Protein Structure Prediction

Protein:	SUR1
Organism:	Saccharomyces cerevisiae
Length:	382 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SUR1.

Description	E-value	Query Range	Subject Range
SUR1 - Probable catalytic subunit of a mannosylinositol phosphorylceramide (MIPC) synthase, forms a complex... SUR1_YEAST - Mannosyl phosphorylinositol ceramide synthase SUR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /...	0.0	[1..382]	[1..382]
gi\|31323648 - gi\|31323648\|gb\|AAP47108.1\| MIPC synthase; SURA [Aspergillus nidulans] gi\|67540728, gi\|... - gi\|67540728\|ref\|XP_664138.1\| hypothetical protein AN6534.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	9.0E-67	[1..276]	[1..280]
IMT2_SCHPO - Inositol phosphoceramide mannosyltransferase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843... SPCC4F11.04c - mannosyltransferase complex subunit	7.0E-65	[7..286]	[10..316]
SPAC2F3.01 - mannosyltransferase complex subunit IMT1_SCHPO - Inositol phosphoceramide mannosyltransferase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843...	6.0E-62	[5..265]	[10..275]
gi\|32446529, gi\|... - gi\|32475986\|ref\|NP_868980.1\| surface protein Sur1 [Rhodopirellula baltica SH 1], gi\|32446529\|emb\|CAD...	2.0E-45	[55..251]	[3..221]
gi\|29349184, gi\|... - gi\|29349184\|ref\|NP_812687.1\| hypothetical protein BT_3776 [Bacteroides thetaiotaomicron VPI-5482], g... gi\|251839300, gi... - gi\|253571347\|ref\|ZP_04848754.1\| glycoside transferase family 32 [Bacteroides sp. 1_1_6], gi\|25183930...	3.0E-45	[55..277]	[7..228]
gi\|23002168 - gi\|23002168\|ref\|ZP_00045846.1\| hypothetical protein Lgas_03000149 [Lactobacillus gasseri ATCC 33323] gi\|23002168 - gi\|23002168\|ref\|ZP_00045846.1\| COG3774: Mannosyltransferase OCH1 and related enzymes [Lactobacillus ... gi\|227520740, gi... - gi\|227520740\|ref\|ZP_03950789.1\| glycosyltransferase [Lactobacillus gasseri JV-V03], gi\|227094594\|gb\|... gi\|226820627 - gi\|226820627\|ref\|ZP_03809746.1\| mannosyltransferase OCH1 related enzyme [Lactobacillus gasseri MV-22...	3.0E-41	[55..266]	[3..223]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKELKYLIC FNILLLLSII YYTFDLLTLC IDDTVKDAIL EEDLNPDAPP KPQLIPKIIH  60
   61 QTYKTEDIPE HWKEGRQKCL DL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [83-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPDYKYILWT DEMAYEFIKE EYPWFLDTFE NYKYPIERAD AIRYFILSHY GGVYIDLDDG  60
   61 CERKLDPLLA FPAFLRKTSP LGVSNDVMGS VPRHPFFLKA LKSLKHYDKY WFIPYMTIMG 120
  121 STGPLFLSVI WKQYKRWRIP KNGTVRILQP AYYKMHSYSF FSITK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	29.136677
Match:	PF04488.3
Description:	No description for PF04488.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [248-382]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSSWHLDDAK LMKALENHIL SCVVTGFIFG FFILYGEFTF YCWLCSKNFS NLTKNWKLNA  60
   61 IKVRFVTILN SLGLRLKLSK STSDTASATL LARQQKRLRK DSNTNIVLLK SSRKSDVYDL 120
  121 EKNDSSKYSL GNNSS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	pre 2.0c	PSIPRED	pre v2.61
SignalP	pre 3.0	COILS	1999
DISOPRED	pre v0.2	NCBI nr	circa 2005
PSI-BLAST	~2.2.10	FFAS	ffas
PDB	~2005	Pfam	16
HMMER	2.3.1

View Structure Prediction Details

Top Sequence Alignment Hits