YRC Public Data Repository - Protein Structure Prediction

Protein:	SGF11
Organism:	Saccharomyces cerevisiae
Length:	99 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SGF11.

Description	E-value	Query Range	Subject Range
gi\|76644937 - gi\|76644937\|ref\|XP_871826.1\| PREDICTED: similar to ataxin 7-like 3 isoform 3 [Bos taurus]	163.0	[0..4]	[97..12]
gi\|109489107 - gi\|109489107\|ref\|XP_213493.4\| PREDICTED: similar to ataxin 7-like 3 [Rattus norvegicus]	162.0	[0..4]	[97..327]
gi\|94390945 - gi\|94390945\|ref\|XP_900241.2\| PREDICTED: similar to ataxin 7-like 3 isoform 2 [Mus musculus]	160.0	[0..4]	[97..10]
gi\|22766864 - gi\|22766864\|gb\|AAH37418.1\| ATXN7L3 protein [Homo sapiens]	160.0	[0..4]	[97..11]
gi\|73965548 - gi\|73965548\|ref\|XP_848627.1\| PREDICTED: similar to ataxin 7-like 3 isoform 2 [Canis familiaris]	160.0	[0..4]	[97..12]
gi\|109116181 - gi\|109116181\|ref\|XP_001114294.1\| PREDICTED: similar to ataxin 7-like 3 isoform 2 [Macaca mulatta]	159.0	[0..4]	[97..65]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEETITIDS ISNGILNNLL TTLIQDIVAR ETTQQQLLKT RYPDLRSYYF DPNGSLDING  60
   61 LQKQQESSQY IHCENCGRDV SANRLAAHLQ RCLSRGARR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	84.60206
Match:	PF08209.2
Description:	No description for PF08209.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.400	N/A	N/A	d.58.7	RNA-binding domain, RBD
View	Download	0.329	N/A	N/A	a.26.1	4-helical cytokines
View	Download	0.327	N/A	N/A	f.14.1	Voltage-gated potassium channels
View	Download	0.322	N/A	N/A	c.51.3	B12-dependend dehydatases associated subunit

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits