YRC Public Data Repository - Protein Structure Prediction

Protein:	YPL041C
Organism:	Saccharomyces cerevisiae
Length:	207 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPL041C.

Description	E-value	Query Range	Subject Range
YPL041C - Protein of unknown function involved in maintenance of proper telomere length MRX11_YEAST - MIOREX complex component 11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRX11 PE=1 S... gi\|207340489 - gi\|207340489\|gb\|EDZ68822.1\| YPL041Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190407907 - gi\|190407907\|gb\|EDV11172.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]	0.0	[1..207]	[1..207]

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Predicted Domain #1

Region A:
Residues: [1-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVMNLFFRP CQLQMGSGPL ELMLKRPTQL TTFMNTRPGG STQIRFISGN LDPVKRREDR  60
   61 LRKIFSKSRL LTRLNKNPKF SHYFDRLSEA GTVPTLTSFF ILHEVTAILP LFLLWWLLYN 120
  121 LDLSDDFKLP NFLNGLMDSC HTAMEKFVGK RYQECLNKNK LILSGTVAYV TVKLLYPVRI 180
  181 FISIWGAPYF GKWLLLPFQK LKHLIKK

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Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits