YRC Public Data Repository - Protein Structure Prediction

Protein:	EGD1
Organism:	Saccharomyces cerevisiae
Length:	157 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EGD1.

Description	E-value	Query Range	Subject Range
BTF3_MOUSE - Transcription factor BTF3 OS=Mus musculus GN=Btf3 PE=1 SV=3	4.0E-68	[2..154]	[47..197]
gi\|208965864 - gi\|208965864\|dbj\|BAG72946.1\| basic transcription factor 3 [synthetic construct] BTF3 - basic transcription factor 3 gi\|55624114 - gi\|55624114\|ref\|XP_517710.1\| PREDICTED: basic transcription factor 3 isoform 3 [Pan troglodytes]	6.0E-68	[2..154]	[49..199]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	7.0E-68	[2..154]	[49..199]
gi\|60652869, gi\|... - gi\|60652871\|gb\|AAX29130.1\| basic transcription factor 3 [synthetic construct], gi\|60652869\|gb\|AAX291...	3.0E-67	[2..154]	[5..155]
gi\|28189635 - gi\|28189635\|dbj\|BAC56432.1\| similar to basic transcription factor 3a (BTF3) [Bos taurus]	2.0E-65	[2..146]	[6..150]
gi\|24431603, gi\|... - gi\|50916214\|ref\|XP_468566.1\| Putative transcription factor [Oryza sativa (japonica cultivar-group)],...	3.0E-54	[10..152]	[445..591]
gi\|5679035 - gi\|5679035\|gb\|AAD46830.1\|AF160890_1 BcDNA.GM05329 [Drosophila melanogaster]	3.0E-51	[3..156]	[1..153]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIDQEKLAK LQKLSANNKV GGTRRKLNKK AGSSAGANKD DTKLQSQLAK LHAVTIDNVA  60
   61 EANFFKDDGK VMHFNKVGVQ VAAQHNTSVF YGLPQEKNLQ DLFPGIISQL GPEAIQALSQ 120
  121 LAAQMEKHEA KAPADAEKKD EAIPELVEGQ TFDADVE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	27.920819
Match:	PF01849
Description:	NAC domain

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits