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View Structure Prediction Details

Protein: PMA2
Organism: Saccharomyces cerevisiae
Length: 947 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PMA2.

Description E-value Query
Range		 Subject
Range
gi|31580853 - gi|31580853|dbj|BAC77531.1| plasma membrane H+-ATPase [Sesbania rostrata]
 0.0 [81..943] [1..888]
gi|6759597 - gi|6759597|emb|CAB69823.1| plasma membrane H+ ATPase [Prunus persica]
 0.0 [81..943] [1..888]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
 0.0 [83..943] [1..886]
gi|1621440 - gi|1621440|gb|AAB17186.1| plasma membrane H+-ATPase [Lycopersicon esculentum]
 0.0 [83..943] [1..886]
AT1A1_HORSE - Sodium/potassium-transporting ATPase subunit alpha-1 OS=Equus caballus GN=ATP1A1 PE=3 SV=1
 0.0 [49..910] [7..1012]
gi|447739 - gi|447739|prf||1915304A nylB upstream ORF
 0.0 [26..910] [5..1050]
AT1A3_CHICK - Sodium/potassium-transporting ATPase subunit alpha-3 OS=Gallus gallus GN=ATP1A3 PE=2 SV=1
 0.0 [57..910] [2..1001]

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Predicted Domain #1
Region A:
Residues: [1-37] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTEAKQYK EKPSKEYLHA SDGDDPANNS AASSSSS

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [417-562] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSLHEPYTVE GVSPDDLMLT ACLAASRKKK GLDAIDKAFL KSLIEYPKAK DALTKYKVLE  60
   61 FHPFDPVSKK VTAVVESPEG ERIVCVKGAP LFVLKTVEED HPIPEDVHEN YENKVAELAS 120
  121 RGFRALGVAR KRGEGHWEIL GVMPCM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11000.0
Match: 1mhsA_
Description: Proton ATPase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [38-136] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSTSTSASSS AAAVPRKAAA ASAADDSDSD EDIDQLIDEL QSNYGEGDES GEEEVRTDGV  60
   61 HAGQRVVPEK DLSTDPAYGL TSDEVARRRK KYGLNQMAE

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [195-308] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSIVDELKKT LANTATVIRD GQLIEIPANE VVPGEILQLE SGTIAPADGR IVTEDCFLQI  60
   61 DQSAITGESL AAEKHYGDEV FSSSTVKTGE AFMVVTATGD NTFVGRAAAL VGQA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11000.0
Match: 1mhsA_
Description: Proton ATPase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [137-194] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ENESLIVKFL MFFVGPIQFV MEAAAILAAG LSDWVDVGVI CALLLLNASV GFIQEFQA

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [309-373] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGVEGHFTEV LNGIGIILLV LVIATLLLVW TACFYRTVGI VSILRYTLGI TIIGVPVGLP  60
   61 AVVTT

[Run NCBI BLAST on this sequence.]

Region C:
Residues: [713-905] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IFHRMYSYVV YRIALSLHLE IFLGLWIAIL NNSLDINLIV FIAIFADVAT LTIAYDNAPY  60
   61 APEPVKWNLP RLWGMSIILG IVLAIGSWIT LTTMFLPNGG IIQNFGAMNG VMFLQISLTE 120
  121 NWLIFVTRAA GPFWSSIPSW QLAGAVFAVD IIATMFTLFG WWSENWTDIV SVVRVWIWSI 180
  181 GIFCVLGGFY YIM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11000.0
Match: 1mhsA_
Description: Proton ATPase
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [374-416] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TMAVGAAYLA KKQAIVQKLS AIESLAGVEI LCSDKTGTLT KNK

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [563-712] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPPRDDTAQT INEARNLGLR IKMLTGDAVG IAKETCRQLG LGTNIYNAER LGLGGGGDMP  60
   61 GSELADFVEN ADGFAEVFPQ HKYRVVEILQ NRGYLVAMTG DGVNDAPSLK KADTGIAVEG 120
  121 ATDAARSAAD IVFLAPGLSA IIDALKTSRQ

[Run NCBI BLAST on this sequence.]

Region C:
Residues: [906-947] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STSQAFDRLM NGKSLKEKKS TRSVEDFMAA MQRVSTQHEK SS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11000.0
Match: 1mhsA_
Description: Proton ATPase
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle