Protein: | NCR1 |
Organism: | Saccharomyces cerevisiae |
Length: | 1170 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NCR1.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..1170] | [8..1263] |
|
0.0 | [1..1170] | [8..1265] |
|
0.0 | [2..1170] | [9..1264] |
|
0.0 | [1..1170] | [8..1263] |
|
0.0 | [1..1170] | [8..1264] |
|
0.0 | [1..1170] | [1..1170] |
|
0.0 | [2..1170] | [9..1264] |
|
0.0 | [1..1170] | [8..1264] |
Region A: Residues: [1-284] |
1 11 21 31 41 51 | | | | | | 1 MNVLWIIALV GQLMRLVQGT ATCAMYGNCG KKSVFGNELP CPVPRSFEPP VLSDETSKLL 60 61 VEVCGEEWKE VRYACCTKDQ VVALRDNLQK AQPLISSCPA CLKNFNNLFC HFTCAADQGR 120 121 FVNITKVEKS KEDKDIVAEL DVFMNSSWAS EFYDSCKNIK FSATNGYAMD LIGGGAKNYS 180 181 QFLKFLGDAK PMLGGSPFQI NYKYDLANEE KEWQEFNDEV YACDDAQYKC ACSDCQESCP 240 241 HLKPLKDGVC KVGPLPCFSL SVLIFYTICA LFAFMWYYLC KRKK |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [285-391] |
1 11 21 31 41 51 | | | | | | 1 NGAMIVDDDI VPESGSLDES ETNVFESFNN ETNFFNGKLA NLFTKVGQFS VENPYKILIT 60 61 TVFSIFVFSF IIFQYATLET DPINLWVSKN SEKFKEKEYF DDNFGPF |
Region B: Residues: [490-547] |
1 11 21 31 41 51 | | | | | | 1 TNLLFSDDDI LNAHAFVVTL LLTNHTQSAN RWEERLEEYL LDLKVPEGLR ISFNTEIS |
Region C: Residues: [778-886] |
1 11 21 31 41 51 | | | | | | 1 LAVPQDSYLV DYFKDVYSFL NVGPPVYMVV KNLDLTKRQN QQKICGKFTT CERDSLANVL 60 61 EQERHRSTIT EPLANWLDDY FMFLNPQNDQ CCRLKKGTDE VCPPSFPSR |
Detection Method: | |
Confidence: | 191.0103 |
Match: | 1oy6A_ |
Description: | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains; Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains; Multidrug efflux transporter AcrB transmembrane domain |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [392-489] |
1 11 21 31 41 51 | | | | | | 1 YRTEQIFVVN ETGPVLSYET LHWWFDVENF ITEELQSSEN IGYQDLCFRP TEDSTCVIES 60 61 FTQYFQGALP NKDSWKRELQ ECGKFPVNCL PTFQQPLK |
Region B: Residues: [548-777] |
1 11 21 31 41 51 | | | | | | 1 LEKELNNNND ISTVAISYLM MFLYATWALR RKDGKTRLLL GISGLLIVLA SIVCAAGFLT 60 61 LFGLKSTLII AEVIPFLILA IGIDNIFLIT HEYDRNCEQK PEYSIDQKII SAIGRMSPSI 120 121 LMSLLCQTGC FLIAAFVTMP AVHNFAIYST VSVIFNGVLQ LTAYVSILSL YEKRSNYKQI 180 181 TGNEETKESF LKTFYFKMLT QKRLIIIIFS AWFFTSLVFL PEIQFGLDQT |
Detection Method: | |
Confidence: | 191.0103 |
Match: | 1oy6A_ |
Description: | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains; Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains; Multidrug efflux transporter AcrB transmembrane domain |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [887-977] |
1 11 21 31 41 51 | | | | | | 1 RCETCFQQGS WNYNMSGFPE GKDFMEYLSI WINAPSDPCP LGGRAPYSTA LVYNETSVSA 60 61 SVFRTAHHPL RSQKDFIQAY SDGVRISSSF P |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [978-1170] |
1 11 21 31 41 51 | | | | | | 1 ELDMFAYSPF YIFFVQYQTL GPLTLKLIGS AIILIFFISS VFLQNIRSSF LLALVVTMII 60 61 VDIGALMALL GISLNAVSLV NLIICVGLGV EFCVHIVRSF TVVPSETKKD ANSRVLYSLN 120 121 TIGESVIKGI TLTKFIGVCV LAFAQSKIFD VFYFRMWFTL IIVAALHALL FLPALLSLFG 180 181 GESYRDDSIE AED |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.