YRC Public Data Repository - Protein Structure Prediction

Protein:	YOR387C
Organism:	Saccharomyces cerevisiae
Length:	206 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YOR387C.

Description	E-value	Query Range	Subject Range
VEL1 - Protein of unknown function; highly induced in zinc-depleted conditions and has increased expression... VEL1_YEAST - Protein VEL1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VEL1 PE=1 SV=1	2.0E-99	[1..205]	[1..205]
SPAC977.05c - conserved fungal protein YI75_SCHPO - VEL1-related protein AC977.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC977.05c...	2.0E-93	[1..205]	[1..203]

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Predicted Domain #1

Region A:
Residues: [1-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFLNIFTFF SVLVSVATAV RFDLTNVTCN NLHGPHCGTY VMEVVGQNGT FLGQSTFAGA  60
   61 DVLTESAGDA WARYLGQETR FLPKLTTIAS NDTKNFSPLI FTTNIYTCNP QSIGDAMVPF 120
  121 ANTVTGEIEY NSWADTADNA SFITGLANQL FNSTQYGVQV ASCYPNFASV ILSTPTVNIF 180
  181 AANETLPDYC TAIQLKAVCP PDAGFA

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Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits