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View Structure Prediction Details

Protein: YOR343W-A
Organism: Saccharomyces cerevisiae
Length: 438 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YOR343W-A.

Description E-value Query
Range
Subject
Range
YBR012W-B - Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...
YB12B_YEAST - Transposon Ty1-BR Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY...
558.0 [0..1] [431..1]

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Predicted Domain #1
Region A:
Residues: [1-192]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLHQNP HCPHGSAYAS VTSKEVPSNQ DPLAVSASNL PEFDRDSTKV NSQEETTPGT  60
   61 SAVPENHHHV SPQPASVPPP QNGQYQQHGM MTPNKAMASN WAHYQQPSMM TCSHYQTSPA 120
  121 YYQPDPHYPL PQYIPPLSTS SPDPIDSQDQ HSEVPQAKTK VRNNVLPPHP HTSEENFSTW 180
  181 VKFYIRFLKN SN

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 76.39794
Match: PF01021.10
Description: No description for PF01021.10 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [193-327]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGDIIPNDQG EIKRQMTYEE HAYIYNTFQA FAPFHLLPTW VKQILEINYS DILTVLCKSV  60
   61 SKMQTNNQEL KDWIALANLE YNGSTSADTF EITVSTIIQR LKENNINVSD RLACQLILKG 120
  121 LSGDFKYLRN QYRTK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [328-438]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNMKLSQLFA EIQLIYDENK IMNLNKPSQY KQHSEYKNVS RTSPNTTNTK VTTRNYHRTN  60
   61 SSKPRAAKAH NIATSSKFSR VNNDHINEST VSSQYLSDDN ELSLRPATER I

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.543 N/A N/A d.228.1 Replication modulator SeqA, C-terminal DNA-binding domain
View Download 0.389 N/A N/A a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like
View Download 0.389 N/A N/A a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like
View Download 0.366 N/A N/A a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like
View Download 0.340 N/A N/A c.30.1 PreATP-grasp domain
View Download 0.340 N/A N/A c.30.1 PreATP-grasp domain
View Download 0.324 N/A N/A a.121.1 Tetracyclin repressor-like, C-terminal domain
View Download 0.309 N/A N/A c.23.1 CheY-like
View Download 0.234 N/A N/A f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle