| Protein: | RPA190 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1664 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPA190.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [124..1659] | [4..1472] |
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0.0 | [130..1462] | [14..1182] |
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0.0 | [171..1662] | [46..1450] |
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0.0 | [126..1662] | [5..1465] |
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0.0 | [109..1659] | [4..1368] |
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0.0 | [109..1652] | [4..1362] |
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0.0 | [117..1478] | [2..1202] |
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0.0 | [1..1661] | [1..1693] |
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0.0 | [1..1661] | [1..1717] |
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0.0 | [14..1660] | [16..1643] |
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Region A: Residues: [1-103] |
1 11 21 31 41 51
| | | | | |
1 MDISKPVGSE ITSVDFGILT AKEIRNLSAK QITNPTVLDN LGHPVSGGLY DLALGAFLRN 60
61 LCSTCGLDEK FCPGHQGHIE LPVPCYNPLF FNQLYIYLRA SCL
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.523 | 0.495 | DNA-directed RNA polymerase I complex | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.330 | 0.044 | DNA-directed RNA polymerase I complex | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.323 | 0.031 | DNA-directed RNA polymerase I complex | a.74.1 | Cyclin-like |
| View | Download | 0.233 | 0.018 | DNA-directed RNA polymerase I complex | a.156.1 | S13-like H2TH domain |
| View | Download | 0.287 | 0.011 | DNA-directed RNA polymerase I complex | a.4.12 | TrpR-like |
| View | Download | 0.523 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.330 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.323 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.287 | N/A | N/A | a.4.12 | TrpR-like |
| View | Download | 0.264 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.203 | N/A | N/A | d.15.2 | CAD & PB1 domains |
|
Region A: Residues: [104-1664] |
1 11 21 31 41 51
| | | | | |
1 FCHHFRLKSV EVHRYACKLR LLQYGLIDES YKLDEITLGS LNSSMYTDDE AIEDNEDEMD 60
61 GEGSKQSKDI SSTLLNELKS KRSEYVDMAI AKALSDGRTT ERGSFTATVN DERKKLVHEF 120
121 HKKLLSRGKC DNCGMFSPKF RKDGFTKIFE TALNEKQITN NRVKGFIRQD MIKKQKQAKK 180
181 LDGSNEASAN DEESFDVGRN PTTRPKTGST YILSTEVKNI LDTVFRKEQC VLQYVFHSRP 240
241 NLSRKLVKAD SFFMDVLVVP PTRFRLPSKL GEEVHENSQN QLLSKVLTTS LLIRDLNDDL 300
301 SKLQKDKVSL EDRRVIFSRL MNAFVTIQND VNAFIDSTKA QGRTSGKVPI PGVKQALEKK 360
361 EGLFRKHMMG KRVNYAARSV ISPDPNIETN EIGVPPVFAV KLTYPEPVTA YNIAELRQAV 420
421 INGPDKWPGA TQIQNEDGSL VSLIGMSVEQ RKALANQLLT PSSNVSTHTL NKKVYRHIKN 480
481 RDVVLMNRQP TLHKASMMGH KVRVLPNEKT LRLHYANTGA YNADFDGDEM NMHFPQNENA 540
541 RAEALNLANT DSQYLTPTSG SPVRGLIQDH ISAGVWLTSK DSFFTREQYQ QYIYGCIRPE 600
601 DGHTTRSKIV TLPPTIFKPY PLWTGKQIIT TVLLNVTPPD MPGINLISKN KIKNEYWGKG 660
661 SLENEVLFKD GALLCGILDK SQYGASKYGI VHSLHEVYGP EVAAKVLSVL GRLFTNYITA 720
721 TAFTCGMDDL RLTAEGNKWR TDILKTSVDT GREAAAEVTN LDKDTPADDP ELLKRLQEIL 780
781 RDNNKSGILD AVTSSKVNAI TSQVVSKCVP DGTMKKFPCN SMQAMALSGA KGSNVNVSQI 840
841 MCLLGQQALE GRRVPVMVSG KTLPSFKPYE TDAMAGGYVK GRFYSGIKPQ EYYFHCMAGR 900
901 EGLIDTAVKT SRSGYLQRCL TKQLEGVHVS YDNSIRDADG TLVQFMYGGD AIDITKESHM 960
961 TQFEFCLDNY YALLKKYNPS ALIEHLDVES ALKYSKKTLK YRKKHSKEPH YKQSVKYDPV1020
1021 LAKYNPAKYL GSVSENFQDK LESFLDKNSK LFKSSDGVNE KKFRALMQLK YMRSLINPGE1080
1081 AVGIIASQSV GEPSTQMTLN TFHFAGHGAA NVTLGIPRLR EIVMTASAAI KTPQMTLPIW1140
1141 NDVSDEQADT FCKSISKVLL SEVIDKVIVT ETTGTSNTAG GNAARSYVIH MRFFDNNEYS1200
1201 EEYDVSKEEL QNVISNQFIH LLEAAIVKEI KKQKRTTGPD IGVAVPRLQT DVANSSSNSK1260
1261 RLEEDNDEEQ SHKKTKQAVS YDEPDEDEIE TMREAEKSSD EEGIDSDKES DSDSEDEDVD1320
1321 MNEQINKSIV EANNNMNKVQ RDRQSAIISH HRFITKYNFD DESGKWCEFK LELAADTEKL1380
1381 LMVNIVEEIC RKSIIRQIPH IDRCVHPEPE NGKRVLVTEG VNFQAMWDQE AFIDVDGITS1440
1441 NDVAAVLKTY GVEAARNTIV NEINNVFSRY AISVSFRHLD LIADMMTRQG TYLAFNRQGM1500
1501 ETSTSSFMKM SYETTCQFLT KAVLDNEREQ LDSPSARIVV GKLNNVGTGS FDVLAKVPNA1560
1561 A
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| Detection Method: | |
| Confidence: | 1986.9897 |
| Match: | 1i3qA_ |
| Description: | RBP1 |
Matching Structure (courtesy of the PDB): |
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